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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0007
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0098 + 25560158-25560925                                         32   0.40 
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309...    31   0.70 
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729...    29   2.1  
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199...    29   3.7  
04_03_0732 + 19095320-19095827,19095848-19096621,19096863-190969...    29   3.7  
12_02_0423 + 18944555-18945226,18945309-18945545                       28   4.9  
07_03_0078 - 13147741-13148913                                         28   4.9  
12_02_0854 + 23697826-23698033,23699111-23699276,23699430-236994...    28   6.5  
05_04_0162 + 18645459-18645827,18645934-18646149,18646224-186462...    28   6.5  
11_08_0081 - 28216179-28216381,28216590-28216657,28217131-282172...    27   8.6  
01_01_0476 + 3505799-3506479,3506639-3506897,3508427-3508550,350...    27   8.6  

>05_06_0098 + 25560158-25560925
          Length = 255

 Score = 31.9 bits (69), Expect = 0.40
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = -2

Query: 219 HRPHPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRIWVRTGATSP 40
           HRP P P  +   P L  +P + V   I   P PT F + +      ++++   +  T P
Sbjct: 31  HRPPPPPPSSSSQPALPPSPRTVVPRTIDTTPFPTTFVQADTASFKQVVQMLTGSDTTPP 90


>03_04_0090 +
           17228253-17228403,17229062-17229129,17229238-17230902,
           17231002-17231143,17231648-17232399
          Length = 925

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
 Frame = -2

Query: 240 TNIDQTRH------RPHPLPVQTRHAPVLRANP 160
           T IDQ  H      + H +PVQ  H+PVL+ NP
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNP 356


>12_01_0796 +
           7292523-7292783,7292963-7293018,7295274-7295331,
           7295777-7295843,7296461-7296516,7296638-7296691,
           7296836-7296961
          Length = 225

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -2

Query: 210 HPLPVQTRHAPVLRANPYSEVTDPICRLPL 121
           H L +  RH P L+A P S +    C+LPL
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLPL 136


>06_01_0268 +
           1989069-1989293,1989938-1990020,1990136-1990357,
           1990434-1990621,1990711-1990835,1990988-1991039,
           1991585-1991874,1992229-1992307,1992527-1992657
          Length = 464

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 204 LPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEAL 91
           +P Q + A  + A+P + V    C LP P+LF  L  L
Sbjct: 292 IPYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329


>04_03_0732 +
           19095320-19095827,19095848-19096621,19096863-19096906,
           19097191-19097250
          Length = 461

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 216 RPHPLPVQTRHAPVLRANPYSEVTDP 139
           RP+PL V +RHA VL    +  V DP
Sbjct: 133 RPNPLDVVSRHAGVLSRGDHCLVVDP 158


>12_02_0423 + 18944555-18945226,18945309-18945545
          Length = 302

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 476 GESDCLIKTKHAMALAGVDAM*FLPSALNVNVKKFKQA 589
           GE  CL+ T    A+A  DAM     AL+ +V +FK +
Sbjct: 258 GEGRCLVPTSLVRAIADDDAMATSNPALSRDVNRFKDS 295


>07_03_0078 - 13147741-13148913
          Length = 390

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +1

Query: 346 SGPAFSGLPRIFLAVSRVGFVSCAI 420
           SGP + G  R+F+A+S +G ++ ++
Sbjct: 223 SGPIYKGRERVFIAISDIGMLAVSL 247


>12_02_0854 +
           23697826-23698033,23699111-23699276,23699430-23699466,
           23699531-23700145
          Length = 341

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 15/25 (60%), Positives = 16/25 (64%)
 Frame = -3

Query: 242 ARTSTRPGTGRIRFPSKPDTPRSSE 168
           A TST PG GR R PS P TP  S+
Sbjct: 16  AATSTDPGRGRKRPPS-PSTPTPSD 39


>05_04_0162 +
           18645459-18645827,18645934-18646149,18646224-18646278,
           18646545-18646672,18647134-18647217,18648742-18648867,
           18648949-18649086
          Length = 371

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -3

Query: 230 TRPGTGRIRFPSKPDTPRSSEPILIPKLR 144
           TRP TG+   P K D  RS   + I KLR
Sbjct: 108 TRPRTGKAALPLKRDRTRSKRFLEIQKLR 136


>11_08_0081 -
           28216179-28216381,28216590-28216657,28217131-28217298,
           28217370-28217436,28217509-28217576,28218256-28218420,
           28218490-28218556,28218629-28218696,28219855-28219992,
           28220189-28220353,28221227-28221304,28221380-28221532,
           28222753-28222823,28223077-28223203,28223306-28223565,
           28223679-28223842,28224287-28224450,28225873-28226159
          Length = 826

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = -2

Query: 237 NIDQTRHRPHPLPVQTRHAPVLRANPYSEVTDP--ICRLPLPTLFYRLEALHLGDLLR 70
           N+D    RP P PV       LRA PY     P  +  + L  +   L ++++ D  R
Sbjct: 8   NLDVRVERPRPPPVHPHRPGSLRARPYYRRWTPWIVAAIALSCVVVFLVSMYVNDCPR 65


>01_01_0476 +
           3505799-3506479,3506639-3506897,3508427-3508550,
           3508922-3509030
          Length = 390

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 239 VRYVRLAS*YFNIMRPQKLYIFNMTLAKIVLRFGLDPDPR 358
           VR V+L   Y  I+  +K+Y++N T  K++ +     +P+
Sbjct: 109 VRAVKLGKDYIVIVLERKIYVYNFTDLKLLHQIETQSNPK 148


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,387,045
Number of Sequences: 37544
Number of extensions: 377211
Number of successful extensions: 1248
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1219
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1248
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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