Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0003
         (768 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,938...    30   2.3  
03_03_0090 + 14367033-14367279,14367402-14368205,14368314-143700...    28   7.1  
03_03_0053 + 14109636-14109948,14110075-14110302,14112030-141121...    28   7.1  
12_01_0673 - 5745956-5750346,5750788-5750872,5751018-5751082,575...    28   9.4  

>10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,
            9387180-9387325,9387416-9387572,9387720-9387778,
            9388204-9388360,9389001-9389150,9389280-9389416,
            9390071-9390217,9390292-9390393,9390742-9390799,
            9391997-9392034,9392124-9392250,9392320-9392493,
            9393125-9393256,9393940-9394049,9394752-9394812,
            9395036-9395213,9395326-9395531,9395796-9395915,
            9396496-9396594,9396983-9397204,9397482-9397621,
            9397741-9397852,9398021-9398071,9398151-9398240,
            9398397-9398567,9398663-9398815,9399774-9399950,
            9400045-9400182,9400295-9400365,9400739-9400838,
            9401324-9401380,9401469-9401525,9401619-9401699,
            9401782-9401864,9401975-9402110
          Length = 1632

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = +2

Query: 302  CRPTSTLTEEHRDRILILNRRFLERRLTDDMLRKRVSITADACTDSAAHKCNYELFNRNN 481
            C    +  +   D+ L+L R+  +      MLR    +TA+A  +++  K   E  ++NN
Sbjct: 1045 CAAAKSAAQSEHDKNLLLQRQLDDSLREITMLRSSKIMTAEAERENSNLKNLVESLSKNN 1104

Query: 482  FSIRY 496
             S+ Y
Sbjct: 1105 SSLEY 1109


>03_03_0090 +
           14367033-14367279,14367402-14368205,14368314-14370039,
           14370135-14370219,14370398-14370457,14370744-14370836
          Length = 1004

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 172 INHYLGVLKTNKIEPRSYSIIPCTKYSRAFLARFE 276
           I H L +LK  KI P   +I  C +YS   ++ F+
Sbjct: 819 ILHALHILKAEKIFPTESNIADCIRYSEMNISGFD 853


>03_03_0053 +
           14109636-14109948,14110075-14110302,14112030-14112181,
           14112305-14112578,14112687-14112739
          Length = 339

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 160 PVIPINHYLGVLKTNKIEPRSYSIIPCTKYSRAFLARFEHS 282
           P+  +  YLG+   NK+ P+ Y +  C K+   F     H+
Sbjct: 248 PIGCVPGYLGIFP-NKLSPKDYDVFGCIKWLNDFSKYHNHA 287


>12_01_0673 - 5745956-5750346,5750788-5750872,5751018-5751082,
            5751816-5751993
          Length = 1572

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 609  VIFRHYLPVPGVGNLRAAGFLGCGKPFLRLPLRNRTLIPV 728
            ++ +H  P   + NLR  G+ GC  PF    L  R L+ +
Sbjct: 926  LVLQHLEPHTNIRNLRICGYEGCVVPFWIENLSVRKLVSI 965


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,878,399
Number of Sequences: 37544
Number of extensions: 449238
Number of successful extensions: 1148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)