Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0142
         (599 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157...    29   2.8  
10_06_0143 - 11183574-11183761,11183989-11184344,11184437-111845...    27   8.7  
07_03_0626 + 20060013-20060273,20061017-20061274                       27   8.7  
06_01_0655 + 4742267-4742531,4743313-4744136                           27   8.7  
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56...    27   8.7  

>01_07_0197 +
           41912207-41912652,41913226-41913800,41913828-41915748,
           41915836-41916049,41916143-41916394,41916469-41916528,
           41916646-41916776,41916898-41917012,41917084-41917239
          Length = 1289

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 12  YKEFLARG-ARKVTTGITGLWQPSVHSDVAF*SFDVG 119
           YK F A G  RKV  GIT  + PS+  D+AF S  +G
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFDSAALG 669


>10_06_0143 -
           11183574-11183761,11183989-11184344,11184437-11184592,
           11184825-11184994,11185906-11186064,11186856-11187164,
           11187281-11187576,11187825-11188174,11188279-11188434,
           11188634-11188803,11189289-11189447,11190702-11191010,
           11191172-11191458,11191911-11192263,11192366-11192521,
           11192680-11192849,11195800-11195958,11196937-11197254,
           11197658-11197786
          Length = 1449

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 174 FDG*TIQRLANFVRNDRKSRHRRIKKQ 94
           FD  T+++  NFVRN+R S    + KQ
Sbjct: 872 FDNYTVEQNINFVRNNRSSDINTVTKQ 898


>07_03_0626 + 20060013-20060273,20061017-20061274
          Length = 172

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 380 RLGWLRP*RRSGIIP 336
           RLGWLRP R S ++P
Sbjct: 32  RLGWLRPSRLSAVVP 46


>06_01_0655 + 4742267-4742531,4743313-4744136
          Length = 362

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
 Frame = -3

Query: 507 LRDPN-GLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPAD 331
           +RDP  G+R  +  F       +++  E    RG    ++ PD A +AS     + + A+
Sbjct: 130 IRDPRKGVRVWLGTFNSPEEAARAYDAEARRIRGKKAKVNFPDGAPVAS-----QRSHAE 184

Query: 330 GTSXHRPLGRVHE-PNVRNCGS 268
            +S + P   + E P V + G+
Sbjct: 185 PSSMNMPAFSIEEKPAVMSAGN 206


>02_01_0083 -
           566201-567127,567223-567464,567623-567880,568173-568298,
           568420-568489
          Length = 540

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 387 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEA 491
           AR C  W PESR  ++ V  ++A    ++R+   A
Sbjct: 449 ARECLQWEPESRPTMSEVVQILATIAPSSRKHAAA 483


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,393,564
Number of Sequences: 37544
Number of extensions: 337551
Number of successful extensions: 847
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)