Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0132
         (771 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0861 + 8153108-8153266,8154633-8155136                           29   5.4  
06_02_0092 - 11624905-11625123,11625206-11625292,11625767-116258...    28   9.5  
04_03_0946 + 20975955-20976095,20976189-20976330,20976449-209765...    28   9.5  
03_04_0201 - 18409088-18409306,18409389-18409475,18409950-184100...    28   9.5  
01_05_0005 - 16886553-16886946,16887079-16887404                       28   9.5  

>12_01_0861 + 8153108-8153266,8154633-8155136
          Length = 220

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -3

Query: 502 RKSPVSLFFVTTSRAGSG*FARLLPSLDVVAVSQAPSPESNP--DSPLPVTTMVVAE 338
           R +P SL    +     G   RL  S  +VA+ + P P S+P  D P   TT+ + E
Sbjct: 91  RAAPRSLLSSPSPHCQEGHDPRLCVSAGLVAIPRCPPPTSSPSLDPPESSTTVALIE 147


>06_02_0092 -
           11624905-11625123,11625206-11625292,11625767-11625889,
           11625992-11626351,11626427-11626511,11626603-11626661,
           11627173-11627265,11627360-11627464,11627539-11627636,
           11627811-11627916,11628009-11628131,11628986-11629021,
           11629113-11629310,11629415-11629612,11629917-11630056,
           11630181-11630322,11630416-11630556
          Length = 770

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -3

Query: 487 SLFFVTTSRAGSG*FARLLPSLDVVAVSQAPSPESNPDSPLPVTTM 350
           ++ F T S +GS  F+R+  + DVV + +A     +P   LP T +
Sbjct: 428 AIVFSTLSFSGSSIFSRMARAFDVVIIDEAAQAVGDP-VQLPATVI 472


>04_03_0946 +
           20975955-20976095,20976189-20976330,20976449-20976588,
           20976893-20977090,20977195-20977392,20977484-20977519,
           20978374-20978496,20978589-20978694,20978869-20978966,
           20979041-20979145,20979240-20979332,20979842-20979900,
           20979984-20980068,20980144-20980503,20980606-20980728,
           20981203-20981289,20981372-20981590
          Length = 770

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -3

Query: 487 SLFFVTTSRAGSG*FARLLPSLDVVAVSQAPSPESNPDSPLPVTTM 350
           ++ F T S +GS  F+R+  + DVV + +A     +P   LP T +
Sbjct: 428 AIVFSTLSFSGSSIFSRMARAFDVVIIDEAAQAVGDP-VQLPATVI 472


>03_04_0201 -
           18409088-18409306,18409389-18409475,18409950-18410072,
           18410175-18410534,18410610-18410694,18410780-18410838,
           18411350-18411442,18411537-18411641,18411716-18411813,
           18411988-18412093,18412186-18412308,18413163-18413198,
           18413290-18413487,18413592-18413789,18414094-18414233,
           18414356-18414497,18414591-18414731
          Length = 770

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -3

Query: 487 SLFFVTTSRAGSG*FARLLPSLDVVAVSQAPSPESNPDSPLPVTTM 350
           ++ F T S +GS  F+R+  + DVV + +A     +P   LP T +
Sbjct: 428 AIVFSTLSFSGSSIFSRMARAFDVVIIDEAAQAVGDP-VQLPATVI 472


>01_05_0005 - 16886553-16886946,16887079-16887404
          Length = 239

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 621 RNNFSIRYWSWNYRGC 574
           R+N S RYW W   GC
Sbjct: 90  RSNSSFRYWRWQPHGC 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,717,095
Number of Sequences: 37544
Number of extensions: 443675
Number of successful extensions: 1143
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1143
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)