Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0128
         (689 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0177 + 15140414-15140777,15142067-15142239                       31   1.1  
07_03_1231 + 25047067-25047262,25047876-25048045,25048897-250490...    29   3.5  
11_01_0209 - 1642473-1642579,1642783-1642826,1642935-1643023,164...    28   8.0  
06_03_0099 + 16633928-16638213,16638299-16638386,16638823-166389...    28   8.0  
01_06_1087 - 34430521-34430899,34432336-34432806,34432926-344331...    28   8.0  

>03_03_0177 + 15140414-15140777,15142067-15142239
          Length = 178

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = -2

Query: 304 LDGSISLSPLYPVPTIDCTSESLRSSIRVSPDFDLTRHSSPSFGSQHLCSE 152
           +DG+ + SP  P P +DCT+E+L+  +    D+     ++PS  S+  C E
Sbjct: 24  VDGATASSPA-PAPAVDCTAEALK--LADCLDYVTPGKTAPSRPSKLCCGE 71


>07_03_1231 +
           25047067-25047262,25047876-25048045,25048897-25049030,
           25049122-25049369,25049799-25049904,25049992-25050130,
           25050258-25050385,25050472-25050733
          Length = 460

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 516 LLTKLAHLAPSSDLRLHRSSKPEFSPI 436
           +L  L +LAP  DLR+  SSKP F  I
Sbjct: 258 MLETLVNLAPVLDLRIFSSSKPSFIKI 284


>11_01_0209 -
           1642473-1642579,1642783-1642826,1642935-1643023,
           1643114-1643158,1643484-1643591,1643691-1643776,
           1643917-1644004,1644211-1644387,1644720-1644795,
           1644898-1644947,1645030-1645092,1645332-1645434,
           1645513-1645615,1645731-1645791,1646268-1646308,
           1646792-1646825
          Length = 424

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = -1

Query: 620 WPPSCCHERPTPFM-VSHERFLGALNYVWFIPQRQFCLQNWPTWHRHQIS 474
           W P   H+  +P   +   + L      W  P+++  LQNWP W    IS
Sbjct: 175 WLPETIHKHKSPEKDIKRIKELPLQQAYWDSPRKKSLLQNWP-WMSTMIS 223


>06_03_0099 +
           16633928-16638213,16638299-16638386,16638823-16638950,
           16640008-16640278
          Length = 1590

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/31 (51%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = -1

Query: 677 GWLLRQVSRCTLLSGFRL---PWPPSCCHER 594
           G+LLR  +   LLS  RL   P PP CCH R
Sbjct: 63  GYLLRHSAHFLLLSA-RLRPPPPPPRCCHRR 92


>01_06_1087 -
           34430521-34430899,34432336-34432806,34432926-34433112,
           34433470-34433599,34433794-34434125,34434566-34435050,
           34435185-34435752,34436579-34436640,34437569-34437636
          Length = 893

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = -2

Query: 433 KFENRLRSFRPQCL*SFALPDETVLKFYIDASYPEGNF-GRNQLLDGSISLSPLY 272
           K E  LRSF       + LP     K+ I A++  GN+ GRN    GS  L  L+
Sbjct: 93  KQEETLRSFPDGQRNCYTLPTNRSKKYLIRATFTYGNYDGRNSSESGSPFLFGLH 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,582,382
Number of Sequences: 37544
Number of extensions: 442227
Number of successful extensions: 981
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)