Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0125
         (751 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0861 + 8153108-8153266,8154633-8155136                           32   0.56 
09_01_0019 + 403078-404211                                             31   1.3  
03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130...    28   9.1  
01_05_0005 - 16886553-16886946,16887079-16887404                       28   9.1  

>12_01_0861 + 8153108-8153266,8154633-8155136
          Length = 220

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = -3

Query: 518 PITSLVRVPYRYFSSLPPRAGSG*FARLLPSLDVVAVSQAPSPESNP--DSPLPVTTMVV 345
           P + L   P    SS  P    G   RL  S  +VA+ + P P S+P  D P   TT+ +
Sbjct: 86  PSSQLRAAPRSLLSSPSPHCQEGHDPRLCVSAGLVAIPRCPPPTSSPSLDPPESSTTVAL 145

Query: 344 AE 339
            E
Sbjct: 146 IE 147


>09_01_0019 + 403078-404211
          Length = 377

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +1

Query: 370 GESGFDSGEGA*ETATTSKEGSRRANYPLPARGGSDEK*RYG 495
           G S  DSG GA ++A   K  SRR  +      GSD   R+G
Sbjct: 321 GASDGDSGSGASDSADDRKRSSRRRRHRKSESSGSDGDERHG 362


>03_01_0161 +
           1307206-1307769,1307979-1308101,1308182-1308286,
           1308688-1308867,1308988-1309050,1309151-1309345,
           1309704-1309805,1309885-1309947,1310045-1310113,
           1310215-1310270,1310587-1310755
          Length = 562

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = -3

Query: 479 SSLPPRAGSG*FARLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES**GRHLK- 303
           SS PP   S   +RL  +      S AP P  +  +P P +  V ++  I S  G +L  
Sbjct: 6   SSKPPTPASTPSSRLAAAPSSRVSSAAPHPSPSSSAPTPASRTVYSDRFIPSRAGSNLAL 65

Query: 302 -DASPVLDH 279
            D +P   H
Sbjct: 66  FDLAPSPSH 74


>01_05_0005 - 16886553-16886946,16887079-16887404
          Length = 239

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 623 RNNFSIRYWSWNYRGC 576
           R+N S RYW W   GC
Sbjct: 90  RSNSSFRYWRWQPHGC 105


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,203,831
Number of Sequences: 37544
Number of extensions: 431207
Number of successful extensions: 1147
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1147
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)