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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0118
         (428 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1107 - 24024387-24024497,24025799-24026410                       30   0.69 
01_07_0306 + 42638683-42638990,42639074-42639314,42639935-426402...    29   2.1  
10_01_0085 + 1061962-1062141,1062283-1062431,1062734-1062819,106...    28   2.8  
02_05_1011 + 33487670-33487958,33490794-33492100,33492541-334928...    28   2.8  
02_01_0362 + 2607097-2607371,2607766-2608612,2608842-2608910,260...    27   4.9  
05_05_0213 + 23307403-23307573,23308691-23308810                       27   6.4  
01_06_0090 + 26358051-26359157,26359582-26359701,26359968-263600...    27   6.4  
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353...    27   8.5  
05_06_0282 + 26915249-26915881                                         27   8.5  

>07_03_1107 - 24024387-24024497,24025799-24026410
          Length = 240

 Score = 30.3 bits (65), Expect = 0.69
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -3

Query: 348 KPQSPARRSFSGLPGPLGQGEHADSFS--VARVRPGHLRASQTCYCSIS 208
           K ++PA  S +  PGP G G  ADS +  +  V      A   C CS++
Sbjct: 179 KAKAPAASSTADAPGPAGDGVAADSTACPICDVFSSRCAAYLDCSCSVT 227


>01_07_0306 + 42638683-42638990,42639074-42639314,42639935-42640236,
            42640431-42640607,42640853-42641617,42641697-42641791,
            42641889-42641951,42642047-42642135,42642229-42642324,
            42642457-42643104,42643596-42643628,42643838-42643912,
            42644442-42644603,42644604-42644674,42644758-42644815,
            42645196-42645394,42645487-42645552,42645699-42646183
          Length = 1310

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 371  PRLWGIIANPNPQHEGVSAGCPGL*ARENML 279
            P LW +++ P P+++ +  G PG   R  +L
Sbjct: 1110 PFLWNVLSAPLPKNDAIDGGLPGSADRPKLL 1140


>10_01_0085 +
           1061962-1062141,1062283-1062431,1062734-1062819,
           1062986-1063113,1063213-1063341,1063428-1063495,
           1063575-1063812
          Length = 325

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 296 PRGPGNPLKLLRAGDWGLQLSPINEEFLVSASHKLALITSLPFV 427
           P   G PL+LL  GDWG +    N+  +     K+A  T + FV
Sbjct: 31  PVAAGAPLRLLVVGDWG-RKGGYNQTRVAEQMGKVAEETEIDFV 73


>02_05_1011 +
           33487670-33487958,33490794-33492100,33492541-33492853,
           33493190-33494247
          Length = 988

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 304 PGQPAETPSCWGLGFAIIPHKRGIPSKR 387
           PG+P +TP  W +  + +P +  +P+KR
Sbjct: 443 PGEPRDTPRGWTVSPSGLPLRVSVPTKR 470


>02_01_0362 +
           2607097-2607371,2607766-2608612,2608842-2608910,
           2609968-2610202,2610454-2610536,2610924-2611046,
           2611326-2611379
          Length = 561

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -3

Query: 345 PQSPARRSFSGLPGPLGQGEHADSFSVARVRP 250
           PQ P    F GLP  +G  +H D  ++A   P
Sbjct: 278 PQKPVENFFKGLPYAVGD-QHGDWIAIAHQHP 308


>05_05_0213 + 23307403-23307573,23308691-23308810
          Length = 96

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = -3

Query: 243 LRASQTCYCSISCGSK--TPVPLRRILIRRQ*VARHEAAHT*IT-TPI 109
           LRAS  C CS++ GS+  TP P  +  +R     R EA +T  T TP+
Sbjct: 42  LRASVCCRCSVAAGSQNITPFPDLKFELR----TRQEAKNTLNTCTPL 85


>01_06_0090 +
           26358051-26359157,26359582-26359701,26359968-26360099,
           26360194-26360375,26360488-26360602,26362001-26362135,
           26362261-26362395
          Length = 641

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -3

Query: 345 PQSPARRSFSGLPGPLGQGEHADSFS 268
           P++P R S SG P P G    A SF+
Sbjct: 20  PETPGRGSSSGSPAPGGSASKAVSFA 45


>09_02_0048 -
           3532663-3533475,3534086-3534589,3534715-3535740,
           3536083-3536226,3536974-3537375,3537499-3537721,
           3537830-3542368,3542480-3542599,3543005-3543038,
           3543922-3544102,3544198-3544815,3545022-3551098,
           3551139-3551304,3551508-3551614,3552056-3552178,
           3553417-3553642
          Length = 5100

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 2   INSSFLIRWVVVHGRS*LVERFVWLIPVTN 91
           +N+S L RW ++  R  LV R + L PVT+
Sbjct: 792 VNASGLTRWALLLSRLLLVLRHMLLYPVTH 821


>05_06_0282 + 26915249-26915881
          Length = 210

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 71  RQIAPPTKNGHAPPPTESRKS 9
           RQ+APP   G+ PP T  R++
Sbjct: 156 RQLAPPPPMGNPPPNTHRRRT 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,420,681
Number of Sequences: 37544
Number of extensions: 256690
Number of successful extensions: 696
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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