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Last updated: 2019/10/06
 
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVf0055
         (465 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0941 - 21717703-21718091,21718454-21718564,21718707-217187...    27   9.8  
08_02_1170 + 24876197-24877070,24877563-24877606,24877805-248779...    27   9.8  

>10_08_0941 -
           21717703-21718091,21718454-21718564,21718707-21718791,
           21718885-21719106,21719804-21720292,21722206-21722322
          Length = 470

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -1

Query: 264 LTLFSESRLNDRRGPKMNFGLISWT 190
           +TL S+  + D+  PK   G++SW+
Sbjct: 323 ITLPSQKPVTDKPNPKQGIGMLSWS 347


>08_02_1170 +
           24876197-24877070,24877563-24877606,24877805-24877900,
           24877999-24878544
          Length = 519

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -2

Query: 107 LPMRHFLQLALWLSYCI*KLFSANNFKDYTSA 12
           LPM   L LALWL+ C+  ++ +NN     SA
Sbjct: 248 LPMAIILFLALWLTLCL--MYCSNNTAKALSA 277


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,248,676
Number of Sequences: 37544
Number of extensions: 145561
Number of successful extensions: 234
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 234
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

The construction of this database has been supported by
Grant-in-Aid for Publication of Scientific Research Results,
JSPS, Japan (1999-2003, 2005-2018).

The EST sequencing was supported by the Genome Analysis Program,National Bioresource Project (NBRP),
Grants-in-Aid for Scientific Research, MEXT,and the Agrigenome Program, NIAS/MAFF.
The maintenance and distribution of the DNA clones are supported by the National Bioresource Project (NBRP).