Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20029
         (681 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0555 - 26210346-26211458,26211530-26211719,26211826-262119...    29   3.4  
03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,951...    29   3.4  

>04_04_0555 -
           26210346-26211458,26211530-26211719,26211826-26211960,
           26212072-26212169,26212262-26212425,26213558-26214032
          Length = 724

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 518 HSYPSLFIQSFKHLIIKFFGCSPAFYGI 435
           H +PSL +Q+F+H    FF  SP + G+
Sbjct: 278 HKFPSLGLQAFQHKF--FFDFSPTYVGV 303


>03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,
            9515765-9516102,9516191-9516329,9517083-9517152,
            9517201-9517307,9517387-9517437,9517549-9517660,
            9517783-9517869,9517958-9518133,9518479-9518586,
            9518654-9518812,9518888-9518971,9519053-9519258,
            9519565-9519666,9519768-9519877,9519963-9520114,
            9520380-9520548,9520841-9520878,9521963-9522571,
            9523314-9523784,9523786-9523871,9524396-9524906,
            9525388-9525412,9526001-9526051,9526228-9526301,
            9526412-9526534,9526667-9526738,9526924-9527020,
            9527174-9527283
          Length = 1649

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -3

Query: 415  VEYAYLLNSCRVTLYSTMGLVTFS 344
            VE +Y+  SC+ TL +TM LVT S
Sbjct: 1424 VEKSYMCPSCKSTLTNTMSLVTIS 1447


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,267,132
Number of Sequences: 37544
Number of extensions: 245879
Number of successful extensions: 494
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)