Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20027
         (677 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0381 + 2981762-2982075,2982302-2982658,2982752-2982800           31   1.1  
02_05_0490 + 29456825-29457499,29458771-29459057,29460922-294610...    28   7.9  

>05_01_0381 + 2981762-2982075,2982302-2982658,2982752-2982800
          Length = 239

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = +2

Query: 404 VLLEDGLLFLRVMRGKKESDEGVYWCVARNPVGEALAKTLRLL 532
           VLL DGL FLRV+  ++  D   +  V  N   EAL + + +L
Sbjct: 117 VLLRDGLNFLRVVDLRRPGDASHHRLVMLNVTREALGRAISVL 159


>02_05_0490 + 29456825-29457499,29458771-29459057,29460922-29461039,
            29461451-29461972,29462058-29462170,29463033-29463053,
            29463726-29463960,29464218-29464381,29464695-29464776,
            29465077-29465166,29465625-29465858,29466347-29466418,
            29466857-29467000,29467573-29467659,29467940-29468098,
            29469216-29469476,29469789-29469836
          Length = 1103

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/65 (24%), Positives = 33/65 (50%)
 Frame = +3

Query: 240  EISKPAPRIKEHPADTIVGRSEPATLRCVSEENPNRQYSGIKMARLLLLMTTHKECCLKT 419
            ++ +P P  +    D   G++  A L C+  E  +  + G+K   + +++ TH     KT
Sbjct: 835  DLRRPVPMNRLLQGDVGCGKTVVAFLACM--EVISSGFQGLKTGEIAMVIGTHSLIGDKT 892

Query: 420  DYSSL 434
            ++S+L
Sbjct: 893  EFSAL 897


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,084,999
Number of Sequences: 37544
Number of extensions: 402270
Number of successful extensions: 933
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)