Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20020
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0686 - 31246156-31246555,31246667-31246884,31247007-312471...    30   2.0  
07_03_1204 + 24855052-24855210,24855411-24855974,24856157-248562...    29   3.5  
04_03_0564 + 17198094-17198441                                         29   4.6  
12_02_1267 - 27448871-27450445                                         28   6.0  
05_01_0084 + 562119-562411,562854-562902,563151-563162,563194-56...    28   6.0  

>01_06_0686 -
           31246156-31246555,31246667-31246884,31247007-31247129,
           31247304-31247501,31247596-31247994
          Length = 445

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/64 (28%), Positives = 27/64 (42%)
 Frame = -3

Query: 653 SGSGRRRPGAELEYEGIRSRALFADSRP*FCCPGPSGWPLRIALRPSLCLTFSKSFAEIC 474
           SG   R   A L +   R + LF D RP +     S W + +A+ P+     S  F    
Sbjct: 41  SGGASRAAAASLPFVERRGKRLFLDGRPFYINGWNSYWLMDLAVEPNTRPRVSSMFRTAV 100

Query: 473 LVGI 462
            +G+
Sbjct: 101 SMGL 104


>07_03_1204 +
           24855052-24855210,24855411-24855974,24856157-24856225,
           24856304-24856426,24856733-24856864,24857143-24857266,
           24857547-24857614,24857849-24857991,24858615-24858722,
           24858826-24858901,24859442-24859578,24859660-24859819,
           24859901-24860080,24860159-24860275,24860540-24860695,
           24861209-24861379,24861479-24861591,24861669-24861792,
           24861961-24862056,24862139-24862201,24862299-24862364
          Length = 982

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 515 TASTRSEVANLKDLDNRITVENLQTALGYEY--LRTPALHLDDGGQS 649
           +A+ R  V  L  LDN   +EN  +  G++Y  L  P LH+   G S
Sbjct: 405 SANPREHVMELAKLDNVELIENDGSPCGFKYFLLWNPPLHMTKEGSS 451


>04_03_0564 + 17198094-17198441
          Length = 115

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +1

Query: 556 GQQNYGRESANSARLRIPSYSSSAPGRRRPEP 651
           G Q  GRE  N  R+ +P YS    GRR  +P
Sbjct: 81  GHQLGGREGGNGDRIHVPEYSGG--GRRGEKP 110


>12_02_1267 - 27448871-27450445
          Length = 524

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 2/75 (2%)
 Frame = +3

Query: 225 WWYCLS*PRKLNITFFAPREXYDRNYNLKLIK--RALFRSFGIKSTINERQDLIVRDKYK 398
           WWY    P + N+  F PR+   R Y L   +  R L     +   + E + + +R++ +
Sbjct: 118 WWYPSKKPPRTNVISFYPRDDDARFYRLVFHRRHRDLVLDAYLPHVLAEGRAVTIRNRQR 177

Query: 399 VSGTAAKLGRLTGYH 443
              T    G  T Y+
Sbjct: 178 RLFTNNAPGASTSYY 192


>05_01_0084 +
           562119-562411,562854-562902,563151-563162,563194-563327,
           563716-566278
          Length = 1016

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/58 (34%), Positives = 26/58 (44%)
 Frame = +1

Query: 466 PTRQISAKLLLNVRQSDGLNAIRSGQPEGPGQQNYGRESANSARLRIPSYSSSAPGRR 639
           PT Q+S+   LN  Q+    A  SG   GP    YG+ S  S +   P Y +  P  R
Sbjct: 311 PTSQLSS---LNPNQNQRFAAPASGGVFGPPGNAYGQPSRPSYQQPPPVYMNRGPASR 365


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,612,050
Number of Sequences: 37544
Number of extensions: 388285
Number of successful extensions: 1048
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1047
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)