Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30024X
         (369 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1164 - 35026345-35026954,35027853-35027939,35028120-350284...    30   0.65 
04_04_0951 + 29614196-29615275                                         27   4.6  
04_03_0554 - 17075142-17075159,17075788-17076591,17076619-170767...    27   6.1  
12_01_0296 + 2240376-2240580,2241556-2241764,2241847-2241975,224...    26   8.1  
09_02_0384 - 8294914-8297817                                           26   8.1  

>01_06_1164 - 35026345-35026954,35027853-35027939,35028120-35028493,
            35037372-35038586,35038659-35039316,35039331-35041012
          Length = 1541

 Score = 29.9 bits (64), Expect = 0.65
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +1

Query: 208  ICLTASYSVSPMRRLLEMSHTPPSASVCSPRVPRTCR 318
            +CL+   S SP     +   TPP+ S  SP  PR  R
Sbjct: 1267 VCLSIMASASPSASPPQPDETPPADSAVSPPPPRAAR 1303


>04_04_0951 + 29614196-29615275
          Length = 359

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = +1

Query: 175 SILMSSAMPSYICLTASYSVSPMRRLLEMSHTPPSASVCSPRVPRTCR 318
           S+L+ +A+ +++ L AS S+  + RLL  S  PP      P +PRT R
Sbjct: 29  SLLIIAALLAFVLL-ASVSIHLLLRLLSRSSPPPPP---PPPLPRTRR 72


>04_03_0554 -
           17075142-17075159,17075788-17076591,17076619-17076719,
           17077095-17077751,17077827-17078768,17078837-17078896,
           17079131-17079763,17079886-17079942,17080177-17080702
          Length = 1265

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 21/69 (30%), Positives = 27/69 (39%)
 Frame = +1

Query: 115 ASAER*INTQAARGGAYRDFSILMSSAMPSYICLTASYSVSPMRRLLEMSHTPPSASVCS 294
           A  E+ I  +A R      +SI M S  P+YI L  S  V        ++H    A V  
Sbjct: 306 AKIEQVIANRALRRNTPSKYSIAMES--PTYIALDTSPQVPTRLHRKHIAHDERQALVSR 363

Query: 295 PRVPRTCRW 321
                T RW
Sbjct: 364 QNESFTIRW 372


>12_01_0296 +
           2240376-2240580,2241556-2241764,2241847-2241975,
           2242271-2242417,2243045-2243108,2243208-2243311,
           2243373-2243411
          Length = 298

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 130 IVPRRPGTSQRAAPPPLLL 74
           + PRR   +++A+PPP LL
Sbjct: 37  VAPRRENATKKASPPPSLL 55


>09_02_0384 - 8294914-8297817
          Length = 967

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +1

Query: 247 RLLEMSHTPPSASVCSPRVPRTCRWYLD 330
           R+L+++H P   S+C+ ++   C  Y+D
Sbjct: 832 RILQLNHLPSLESICTFKLVCPCLEYID 859


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,905,844
Number of Sequences: 37544
Number of extensions: 143650
Number of successful extensions: 467
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 467
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)