Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30020
         (628 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0012 + 17147764-17148141,17148316-17148465,17149360-171497...    29   4.0  
07_03_1762 - 29299328-29299437,29299782-29299871,29300487-293012...    28   5.3  
09_04_0261 + 16207565-16207825,16207935-16208087,16208191-162083...    28   7.0  
03_01_0348 + 2739523-2741006,2742046-2742232                           27   9.2  

>01_05_0012 +
           17147764-17148141,17148316-17148465,17149360-17149729,
           17149898-17150015,17150121-17150226,17150326-17150418,
           17150498-17150593,17151169-17151891,17152012-17152160,
           17153434-17153520,17153541-17153625
          Length = 784

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -3

Query: 521 HHLDADGWRPAAGIQEAGERRQRDRE 444
           HH  A  W P  G +  GER + +RE
Sbjct: 22  HHASAPPWTPLGGWEGRGERERGERE 47


>07_03_1762 -
           29299328-29299437,29299782-29299871,29300487-29301291,
           29301956-29303278
          Length = 775

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +3

Query: 369 RTVVPRLVGQNVRKPSRSWCEN-GIFFSISLTALTSLLYTCCRSPPICIEMMRRWS 533
           RT + R VG+  ++P  +W +  GI  S    A    +  CC +   C   +  WS
Sbjct: 347 RTFLSRRVGEKGKEPEEAWKQTCGICLSEEQRATIQGVLNCC-AHYFCFACIMEWS 401


>09_04_0261 +
           16207565-16207825,16207935-16208087,16208191-16208316,
           16208595-16208847,16209303-16209485,16209486-16209582,
           16209706-16209769,16209904-16210053,16210215-16210387,
           16210497-16210536,16211170-16211223
          Length = 517

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -3

Query: 500 WRPAAGIQEAGERRQRDREEDPVLAPRPARLPHVLPDQP 384
           WR +A I EAG  +     ED  LA R  R+   +P +P
Sbjct: 331 WRVSATINEAGGWKDHTTVEDMDLAVRLLRVNSQVPSKP 369


>03_01_0348 + 2739523-2741006,2742046-2742232
          Length = 556

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -3

Query: 458 QRDREEDPVLAPRPARLPHVLP 393
           +R+RE  P+L P P  LP VLP
Sbjct: 19  RRNREPLPLLRPPPRPLPRVLP 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,956,405
Number of Sequences: 37544
Number of extensions: 247179
Number of successful extensions: 1029
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1027
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)