Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30018
         (894 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0217 - 1712979-1713794                                           31   1.6  
09_02_0295 - 7039870-7040634                                           29   3.8  
01_06_1040 + 34026545-34026772,34027109-34027303                       29   3.8  
10_08_0814 - 20779400-20779487,20779780-20780030,20780528-207808...    29   6.6  
04_01_0508 + 6647812-6647820,6647864-6648226,6649351-6650673,665...    29   6.6  
06_03_1000 - 26778993-26779478                                         28   8.7  
04_01_0240 + 3137859-3138461                                           28   8.7  

>03_01_0217 - 1712979-1713794
          Length = 271

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 1/42 (2%)
 Frame = -1

Query: 519 CTWPAEEHR-CSAASRRPDCSTARCTSWTRSPDGRSTAGLGC 397
           C+ PA+  R C    R   C T     W   PDG ST    C
Sbjct: 172 CSRPAKRRRKCGEEKRCGHCQTTETPQWRVGPDGPSTLCNAC 213


>09_02_0295 - 7039870-7040634
          Length = 254

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = +3

Query: 426 LDYVSMMCNEQCYSLAVEKLLNIDVPLRAKYIRTLFAEITRLL 554
           L Y+S +C   CY  A       DV +RA+Y R  F    R L
Sbjct: 167 LVYISGLCVVYCYMKASNLFSRFDVHVRARYNRLGFVAFCRSL 209


>01_06_1040 + 34026545-34026772,34027109-34027303
          Length = 140

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = -2

Query: 884 HTAEAVVERVLRSDHADVLGPLHPDPVGGEHVLHLVD 774
           H A    E  + SD   VLG +  +PVG E+ LHLVD
Sbjct: 29  HRAGGEGEEKMSSDGGPVLGGV--EPVGNENDLHLVD 63


>10_08_0814 -
           20779400-20779487,20779780-20780030,20780528-20780812,
           20781563-20782008,20782095-20782485
          Length = 486

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = +3

Query: 519 IRTLFAEITRLLNHIMAVG---THALDVGALTPFFWLFEEREKMMEFYERVSGARMHAAY 689
           +RTL +++TRLL H+  V     H LD        +L  ++ +  +    +S A  ++  
Sbjct: 263 VRTLKSDLTRLLAHVQKVRDEIEHLLDDNEDMAHLYLTRKQLQNQQVEALISSAASNS-- 320

Query: 690 IRPGGVSL 713
           I PGG SL
Sbjct: 321 IVPGGTSL 328


>04_01_0508 + 6647812-6647820,6647864-6648226,6649351-6650673,
            6653569-6653766,6654485-6654568,6655175-6655920,
            6656480-6657341
          Length = 1194

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
 Frame = +3

Query: 231  EKKVRNMILNFGPQHPAAHGVLRLVLELDGETVRAADPHIGLLHRGTEKLIEYKTYTQAL 410
            E+ V NM  +    H  AHG +RL +E++   +R     + ++ R     + YK      
Sbjct: 1005 EQHVSNMCKSCS-NHARAHGQVRLAMEMEKMNIRLGKEMVTMICRQIIVPVYYKNLMARS 1063

Query: 411  PYFDRL-DYVSMMCN-EQCYSLAVEKL 485
                 L D  S   N    Y+L +EK+
Sbjct: 1064 AMLTCLTDSESQRANGNALYALTIEKM 1090


>06_03_1000 - 26778993-26779478
          Length = 161

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 330 GLSLRPVPVRDAAPRERLDAGARSSGSCC 244
           G +LRP  V   APR+   AG R +  CC
Sbjct: 83  GSALRPATVCPPAPRKPRPAGKRMTKRCC 111


>04_01_0240 + 3137859-3138461
          Length = 200

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 21/60 (35%), Positives = 25/60 (41%)
 Frame = -3

Query: 199 GFNDLVDSSGYMTGPSNCFTKSGSGNQRCPSLWEFTL*TAGMFFNKTDFWPKLGDFRNKT 20
           GF DL  SS   T  S C     S N     LW+ T      F  K  F   L D++NK+
Sbjct: 63  GFVDLTCSSS-KTDFSKCKPGQMSYNHSSVPLWDRTTNELASFATKFTFKIVLSDYKNKS 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,832,245
Number of Sequences: 37544
Number of extensions: 547504
Number of successful extensions: 1607
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1540
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1606
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2518669100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)