Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30012X
         (545 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1026 + 30214437-30214937                                        182   2e-46
02_05_0416 + 28791512-28792012                                        178   2e-45
03_06_0776 - 36176390-36177589                                         29   3.2  
06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414           28   4.2  
09_04_0164 + 15265878-15268701,15268782-15269200                       27   7.4  
07_01_1116 + 10308029-10308111,10308575-10308737,10308996-103090...    27   7.4  

>04_04_1026 + 30214437-30214937
          Length = 166

 Score =  182 bits (443), Expect = 2e-46
 Identities = 86/118 (72%), Positives = 106/118 (89%), Gaps = 1/118 (0%)
 Frame = +1

Query: 193 PLGLSPKKVGDDIAKATS-DWKGLKITVQLTVQNRQAQIAVVPYAAALIIRALKEPPRDR 369
           PLGLSPKK+G+DIAK T+ DWKGL++TV+LTVQNRQA+++VVP AAAL+I+ALKEP RDR
Sbjct: 34  PLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDR 93

Query: 370 KKQKNIKHNGNISLEDVIGIAKIMRNRSMARYLSGSVKEILGTAQSVGCTVEGRPSHD 543
           KK KNIKH+GNISL+DVI IA+IMRNRSMA+ ++G+VKEILGT  SVGCTV+G+   D
Sbjct: 94  KKVKNIKHSGNISLDDVIEIARIMRNRSMAKEMAGTVKEILGTCVSVGCTVDGKDPKD 151



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 21/32 (65%), Positives = 24/32 (75%)
 Frame = +3

Query: 93  MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKI 188
           MPPK DP ++  V +R  GGEVGA SSLAPKI
Sbjct: 1   MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKI 32


>02_05_0416 + 28791512-28792012
          Length = 166

 Score =  178 bits (434), Expect = 2e-45
 Identities = 84/118 (71%), Positives = 105/118 (88%), Gaps = 1/118 (0%)
 Frame = +1

Query: 193 PLGLSPKKVGDDIAKATS-DWKGLKITVQLTVQNRQAQIAVVPYAAALIIRALKEPPRDR 369
           PLGLSPKK+G+DIAK T+ DWKGL++TV+LTVQNRQA+++VVP AAAL+I+ALKEP RDR
Sbjct: 34  PLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVSVVPSAAALVIKALKEPERDR 93

Query: 370 KKQKNIKHNGNISLEDVIGIAKIMRNRSMARYLSGSVKEILGTAQSVGCTVEGRPSHD 543
           KK KNIKH+GNISL+DVI IA++MR RSMA+ ++G+VKEILGT  SVGCTV+G+   D
Sbjct: 94  KKVKNIKHSGNISLDDVIEIARVMRPRSMAKEMAGTVKEILGTCVSVGCTVDGKDPKD 151



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 21/32 (65%), Positives = 24/32 (75%)
 Frame = +3

Query: 93  MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKI 188
           MPPK DP ++  V +R  GGEVGA SSLAPKI
Sbjct: 1   MPPKLDPTQVVDVFVRVTGGEVGAASSLAPKI 32


>03_06_0776 - 36176390-36177589
          Length = 399

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +1

Query: 376 QKNIKHNGNISLEDVIGIAKIMRNRSMARY 465
           +K+I++ G++ LE    + K+M +RSM RY
Sbjct: 113 EKSIQNIGSLELERNAAVEKLMSSRSMHRY 142


>06_01_0796 - 5932794-5934212,5934955-5935013,5936324-5936414
          Length = 522

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 250 WKGLKITVQLTVQNRQAQIAVVPYAAALIIRALKEPPRDRKKQ 378
           W    + V   V +    + V+P A A +IRA+ + P  R++Q
Sbjct: 33  WYSYLVDVDADVDDDMISLRVLPNARAALIRAVADAPGRREEQ 75


>09_04_0164 + 15265878-15268701,15268782-15269200
          Length = 1080

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
 Frame = +1

Query: 133 IC-DVSAGKSVPHHLWPLKSIPLGLSPKKV--GDDIAKATSDW 252
           IC D++ G +  HH  P+K I   L P  V   DD+    SD+
Sbjct: 864 ICSDIAEGMAYLHHHSPVKVIHCDLKPSNVLINDDMTALVSDF 906


>07_01_1116 +
           10308029-10308111,10308575-10308737,10308996-10309062,
           10309120-10309375,10309658-10309781,10310039-10310077
          Length = 243

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -3

Query: 336 DKGCCIGNNSYLGL-SVLNCQLHSD 265
           D GCC    SYLGL  +L C++++D
Sbjct: 62  DCGCCYALPSYLGLFHILICKVYAD 86


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,996,169
Number of Sequences: 37544
Number of extensions: 369273
Number of successful extensions: 913
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)