Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0038
         (791 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0162 + 28090579-28091343                                         29   3.2  
01_05_0503 - 22779025-22779397,22779602-22779627                       28   9.8  

>05_07_0162 + 28090579-28091343
          Length = 254

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +1

Query: 286 PPLCAGRCVAPPAGPV 333
           PPL  GRCV PP  PV
Sbjct: 52  PPLAGGRCVGPPLYPV 67


>01_05_0503 - 22779025-22779397,22779602-22779627
          Length = 132

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 143 LYKQKPFRLTFPTESKYRHHRTAYEIVLIRNTNVARLSN 27
           LYK + ++L +  E+K+R+  TA     IR   +  LSN
Sbjct: 42  LYKSQEYKLHYTLETKHRNRNTANSKDGIRMAAMENLSN 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,827,860
Number of Sequences: 37544
Number of extensions: 384985
Number of successful extensions: 853
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)