Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0031
         (821 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0896 - 12233706-12233801,12234005-12234181,12234741-122348...    79   4e-15
09_04_0738 - 19828852-19828892,19830033-19830156,19830515-198307...    50   2e-06
01_06_0183 - 27268190-27268281,27268454-27268478,27268568-272686...    34   0.12 

>03_02_0896 -
           12233706-12233801,12234005-12234181,12234741-12234854,
           12234928-12235006,12235372-12235533,12235957-12236079,
           12236139-12236218
          Length = 276

 Score = 79.0 bits (186), Expect = 4e-15
 Identities = 61/192 (31%), Positives = 89/192 (46%), Gaps = 15/192 (7%)
 Frame = +3

Query: 267 VKILPA--LQDNYMYL-----------IVDKATKEAAIVDPVEPKTVLKAVEEQGVNLXX 407
           +KI+P   L+DNY YL           IVD++TK AA VDPVEP+ VL A  E GV +  
Sbjct: 1   MKIIPVACLEDNYAYLYPPESILVSCLIVDESTKSAAAVDPVEPEKVLAAAAEVGVRIDC 60

Query: 408 XXXXXXXXXXAGGNEDLIKERPGLIVYGGD-DRIGPSQKKLSTIQSLKSVT*MYSVFLHP 584
                     AGGNE + +  PG+ VYGG  D +     ++     L     +  + LH 
Sbjct: 61  VLTTHHHWDHAGGNEKMAQSVPGIKVYGGSLDNVKGCTDQVENGTKLSLGKDIEILCLHT 120

Query: 585 VIQLGIYVIS*LLQKKVTIQLSSPGDTLFLGGCGQVL-*RARQIKCTKH*QF*AAA*PH* 761
                 ++   +  K+        GDTLF+ GCG+     A Q+  +      +   P  
Sbjct: 121 PCHTKGHISYYVTSKEEEDPAVFTGDTLFIAGCGRFFEGTAEQMYQSLCVTLGSLPKPTQ 180

Query: 762 MFCGHEYTLAGI 797
           ++CGHEYT+  +
Sbjct: 181 VYCGHEYTVKNL 192


>09_04_0738 -
           19828852-19828892,19830033-19830156,19830515-19830718,
           19831505-19831690,19832098-19832172
          Length = 209

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 23/82 (28%), Positives = 41/82 (50%)
 Frame = +3

Query: 258 NMDVKILPALQDNYMYLIVDKATKEAAIVDPVEPKTVLKAVEEQGVNLXXXXXXXXXXXX 437
           ++ ++++P LQDNY Y++ D  T    +VDP E   ++ A+E++  NL            
Sbjct: 82  SLQIELVPCLQDNYAYILHDVDTGTVGVVDPSEATPIINALEKRNQNLTYILNTHHHYDH 141

Query: 438 AGGNEDLIKERPGLIVYGGDDR 503
            GGN +L  +    ++    DR
Sbjct: 142 TGGNLELKAKYGAKVIGSAKDR 163


>01_06_0183 -
           27268190-27268281,27268454-27268478,27268568-27268621,
           27268688-27268747,27269166-27269300,27270106-27270213,
           27270330-27270458,27270845-27270905,27271081-27271112,
           27271161-27271289
          Length = 274

 Score = 34.3 bits (75), Expect = 0.12
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +2

Query: 524 VEHNTKFKIGNLNVQCLFTPCHTTGHICYFV-TAPEEGNDSVVFTGGYTLLR 676
           +EH  K   GNL ++   TP HT G + Y      ++ +  + FTG   L+R
Sbjct: 139 IEHGDKIYFGNLFLEVRSTPGHTAGCVTYVTGEGDDQPSPRMAFTGDALLIR 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,411,307
Number of Sequences: 37544
Number of extensions: 394714
Number of successful extensions: 834
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)