Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0028
         (801 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257...    30   2.5  
03_02_0882 - 12121917-12124446,12124739-12124919,12125057-121251...    29   5.7  
02_01_0502 - 3659564-3659660,3659923-3660061,3660161-3660238,366...    29   5.7  
03_06_0140 + 31951569-31951710,31951943-31952037,31952141-319539...    28   7.5  
06_01_0326 + 2372176-2373057,2373146-2373610                           28   9.9  
05_06_0191 - 26265460-26267016,26267858-26268356,26268789-262688...    28   9.9  

>08_02_1277 +
           25823835-25825113,25825201-25825418,25825501-25825724,
           25826468-25827080,25827735-25827775,25830549-25831191,
           25832595-25834012,25834110-25834251,25834415-25834522,
           25835346-25835558,25835643-25835753,25836099-25836293,
           25836555-25836695,25836835-25836909
          Length = 1806

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = -2

Query: 665 VKTGINGRKKARGGKQEGEDLKPTTKVKTVLGIHSLQFL 549
           VKT +NG+++ +G + +G   +P  KV+  +  H  + +
Sbjct: 325 VKTEVNGKQETKGFESKGVQCEPRNKVELEIKAHKKELM 363


>03_02_0882 -
           12121917-12124446,12124739-12124919,12125057-12125134,
           12125731-12125764,12125864-12125975,12126053-12126238,
           12126505-12126575
          Length = 1063

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 686 KFDSVGVVKTGINGRKKARGGKQEGEDLKPTTKVKTVLG 570
           KF S  V  TGI    + +GG Q     K  +KV+T  G
Sbjct: 546 KFSSANVTTTGITSTNEKKGGLQGQHKEKRDSKVRTDKG 584


>02_01_0502 -
           3659564-3659660,3659923-3660061,3660161-3660238,
           3660486-3660654,3660757-3660873,3660956-3661102,
           3661203-3661388,3661472-3661720,3662196-3662432,
           3662511-3662673,3662748-3662866,3662976-3663068,
           3663595-3663735,3663813-3663896,3663974-3664084,
           3664162-3664260,3664501-3664623,3664908-3664958,
           3665152-3665275,3665357-3665514,3665595-3665709,
           3665931-3666060,3666163-3666328,3667047-3667136,
           3667650-3667857,3668270-3668439,3668542-3668577
          Length = 1199

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = -3

Query: 370 RGGSEMIGQKKHSHGVR*GPSLSERIQLTYHRC--RAEDDYSLR 245
           R   +MIG    S G R GP L+E + L  + C   +E+D  LR
Sbjct: 257 RTNIQMIGALSRSVGYRFGPHLAEAVPLLINYCTSASENDEELR 300


>03_06_0140 +
           31951569-31951710,31951943-31952037,31952141-31953982,
           31954065-31954179,31954260-31954897
          Length = 943

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 16/46 (34%), Positives = 28/46 (60%)
 Frame = -3

Query: 478 SMFQSHQFSKSAAILYSAYV*LNI*KTNELLIVYSTRGGSEMIGQK 341
           +M +SH  S SA +     V + + K N++L+VYS+ GG+   G++
Sbjct: 160 AMPESHLVSPSAHV---GKVAIGVKKLNDILMVYSSGGGARDTGRR 202


>06_01_0326 + 2372176-2373057,2373146-2373610
          Length = 448

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +1

Query: 160 NQTALVADVNAVLNNFNIPVLDPNFSMAGVESNHL--QHDTYGMSVVYVLIDLDLNARRG 333
           N+ A V+D  AVLN FN  VL+   + A      L  ++   G   V   IDL    R+ 
Sbjct: 53  NRAAYVSDPVAVLNRFNEDVLNTTTATAAAARRSLMRRYRRRGPCTVTNPIDLCWRCRKN 112

Query: 334 YVS 342
           + S
Sbjct: 113 WAS 115


>05_06_0191 -
           26265460-26267016,26267858-26268356,26268789-26268859,
           26269079-26269515,26269626-26269681,26269682-26270479,
           26270918-26270973
          Length = 1157

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 16/52 (30%), Positives = 22/52 (42%)
 Frame = +3

Query: 642 PTIYPCLYNTYRIKLEVTSCPSTPTQNFSVAKATIRDSSXIVSXKSEGEPGH 797
           P  + C+Y  Y         P T  Q+    KA  R +S I+  KS+  P H
Sbjct: 391 PIKHFCMYEPYPKGSLEDDVPDTTVQDMLCGKAKARSNSEILVWKSQIPPYH 442


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,644,941
Number of Sequences: 37544
Number of extensions: 342144
Number of successful extensions: 634
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)