Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0002
         (431 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0208 + 1780275-1781123                                           28   2.8  
04_04_1388 - 33179270-33180679                                         27   8.6  
02_05_0083 + 25684816-25685383,25685474-25685499,25686325-256867...    27   8.6  

>01_01_0208 + 1780275-1781123
          Length = 282

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 17/49 (34%), Positives = 24/49 (48%)
 Frame = -2

Query: 406 LALILKPKVSAVR*RYREFIRPMVHHPFCWFWVRMSPALLMSPLLCPFI 260
           L L L+P    ++   R F++  +H P C+F V   P    SP  CP I
Sbjct: 200 LFLTLRPPPFILQGPIRNFVK--IHVPSCYFPVHGCPRSPSSPTGCPTI 246


>04_04_1388 - 33179270-33180679
          Length = 469

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
 Frame = -2

Query: 394 LKPKVSAVR*RYREFIRPMVHHPFCWFWVRMSPALLMSPLLCP--FIVIF-HTRAGLHRR 224
           L P ++A     R  + P   HP         PA L + + CP  +I +F H  A LHR 
Sbjct: 50  LAPLLAAHPDSVRPLVLPFPSHPSL-------PAGLENTMNCPPVYIAVFIHALAALHRP 102

Query: 223 RNAIARSRENH 191
             A ARS+  H
Sbjct: 103 ILAWARSQPAH 113


>02_05_0083 +
           25684816-25685383,25685474-25685499,25686325-25686718,
           25687726-25687814,25687924-25687980,25688341-25688408,
           25688511-25688617,25688698-25688768,25688844-25688912
          Length = 482

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = +3

Query: 273 SNGDINSAGDILTQ 314
           +NGD+N AGD+LT+
Sbjct: 41  ANGDVNRAGDLLTE 54


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,992,849
Number of Sequences: 37544
Number of extensions: 174201
Number of successful extensions: 359
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)