Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0022
         (702 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0010 + 74517-74529,76294-76394,76495-76526,76652-76662,804...    31   0.67 
11_01_0010 + 78629-78641,80422-80522,80633-80664,80790-80800,845...    31   0.67 

>12_01_0010 +
           74517-74529,76294-76394,76495-76526,76652-76662,
           80420-80924,80999-81181,81282-81373,81491-81764,
           81840-82053,82158-82228,82403-82509,82967-83016,
           83125-83208,84060-84119,84196-84285,84824-84900,
           85022-85106,85224-85304,85492-85595,85793-85842,
           86625-86731,87603-87725,87838-87889,88090-88202,
           88265-88405,88513-88602
          Length = 969

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
 Frame = +3

Query: 210 THLA*PVSYVASGVFNVVNYTSTQDV*LTYNFTYVSRTDDNTI-----ILLLWPNTLSRS 374
           TH   P+ Y ++G FN+  YTS + V     F   S TD + I      L    N   R 
Sbjct: 192 THPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDPHEIDKIRQSLANGSNYCGRI 251

Query: 375 TRFKKNLLEFTLRLTI 422
             +KK+   F   LTI
Sbjct: 252 LNYKKDGTPFWNLLTI 267


>11_01_0010 +
           78629-78641,80422-80522,80633-80664,80790-80800,
           84559-85063,85136-85318,85419-85510,85628-85901,
           85977-86190,86295-86365,86540-86646,87104-87153,
           87262-87345,88197-88256,88333-88422,88961-89037,
           89160-89244,89362-89442,89630-89733,89931-89980,
           90764-90870,91743-91865,91978-92029,92230-92342,
           92404-92544,92656-92745
          Length = 969

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
 Frame = +3

Query: 210 THLA*PVSYVASGVFNVVNYTSTQDV*LTYNFTYVSRTDDNTI-----ILLLWPNTLSRS 374
           TH   P+ Y ++G FN+  YTS + V     F   S TD + I      L    N   R 
Sbjct: 192 THPNHPIMYASAGFFNMTGYTSKEVVGRNCRFLQGSGTDPHEIDKIRQSLANGSNYCGRI 251

Query: 375 TRFKKNLLEFTLRLTI 422
             +KK+   F   LTI
Sbjct: 252 LNYKKDGTPFWNLLTI 267


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,164,347
Number of Sequences: 37544
Number of extensions: 205092
Number of successful extensions: 231
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)