Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0016
         (725 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117...    30   2.2  
12_02_0025 + 12408933-12409464,12409590-12409686,12410121-124101...    29   3.8  
01_01_0170 + 1442526-1442618,1442705-1444210,1444312-1444365           29   3.8  
07_03_1530 + 27502546-27502671,27503487-27503561,27504670-275047...    29   5.0  
04_03_0434 + 15889712-15889797,15890086-15890287,15891184-158913...    28   6.6  

>01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,
            1171148-1171398,1171442-1171687,1172220-1172415,
            1172796-1172876,1172966-1173169,1173671-1173880,
            1173953-1174174,1174437-1174480,1174974-1175052,
            1175066-1175227,1175337-1175564,1175786-1175815,
            1175905-1176273,1176356-1176571,1177202-1177683,
            1177930-1177975
          Length = 1352

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +2

Query: 215  ETQTPRSACSLHHSQHRSHKYRSSRGHHEHPDTVPPAGV*RVQGQRA 355
            E +  R+    H + H  H +R    HH+H  +  P    R  GQ+A
Sbjct: 1299 EYEKVRNGKRPHKTGHHRHHHRHHHHHHDHRSSSEPNDKKRQDGQKA 1345


>12_02_0025 +
           12408933-12409464,12409590-12409686,12410121-12410127,
           12412339-12412465,12412907-12413136
          Length = 330

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/62 (22%), Positives = 32/62 (51%)
 Frame = +3

Query: 159 PQRDGERMRRVVQSLYTEEKHRRHDRPAVYTTHNIDRINTEVHGVIMNIPIPFPLPESDA 338
           P +  + +++  ++  TE+K  +H+ PA+Y     D    +++G  +N  +  P+   + 
Sbjct: 210 PNKGVQNIQQKEENDVTEKKEEKHEAPAIYE----DSFQGKLNGAEINEDLEPPVDVDNI 265

Query: 339 CK 344
           CK
Sbjct: 266 CK 267


>01_01_0170 + 1442526-1442618,1442705-1444210,1444312-1444365
          Length = 550

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 21/76 (27%), Positives = 38/76 (50%)
 Frame = -1

Query: 347 VLARVRLRQGERYRDVHDDPVNFCIYAIDVVSGVNCRPIVASVFLFSIQ*LDDSSHPLTV 168
           VL R R+   E  ++  D+P +  + A   +  V   P   +  L+ +  L D +HPL V
Sbjct: 374 VLMR-RIAMYEYTKEGTDEPTHLYLNARSYMDPVTETPREGTSELWDVINLTDDNHPLHV 432

Query: 167 TLWTVASLDPQSLKNL 120
            L    +L+ +SL+++
Sbjct: 433 HLALFVALEQRSLRDV 448


>07_03_1530 +
           27502546-27502671,27503487-27503561,27504670-27504746,
           27505576-27507522,27508478-27508946,27509898-27510079,
           27510746-27511208,27511295-27511691,27511810-27511937,
           27512106-27512273,27512452-27512559,27512830-27512838
          Length = 1382

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 255 HNIDRINTEVHGVIMNIPIPFPLPESDACKDNGL 356
           H++D  + E H ++ +IP   PL   +AC  N L
Sbjct: 585 HSLDTPDGEKHILLKDIPSTIPLDLKNACSQNSL 618


>04_03_0434 +
           15889712-15889797,15890086-15890287,15891184-15891323,
           15891420-15891559,15891762-15891913,15892773-15892902,
           15892990-15893141
          Length = 333

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 390 YKATLPILKSYPKVTVEVKWELQSEHGDL 476
           +KATL +L SY     E KWE ++   DL
Sbjct: 174 FKATLELLVSYKDQVAESKWENEAAAEDL 202


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,762,712
Number of Sequences: 37544
Number of extensions: 395362
Number of successful extensions: 1189
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)