Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0008
         (805 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0205 + 6389343-6389609,6390418-6390486,6390662-6390757,639...    29   3.3  
12_02_1271 + 27472457-27473030,27473122-27473197,27473277-274733...    29   4.3  
03_06_0282 - 32824950-32825135,32825247-32825505,32825651-328259...    28   10.0 

>03_02_0205 +
           6389343-6389609,6390418-6390486,6390662-6390757,
           6391120-6391244,6391331-6391483,6392863-6392992,
           6393122-6393282,6393660-6393702,6393869-6394042,
           6394471-6394525,6394567-6394746,6396234-6396339,
           6396448-6396506,6397419-6397541,6397825-6397919
          Length = 611

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = +2

Query: 635 TI*VDWSVVNELPTSL*HHYDSLQHANIFVKIYLNLT*VISS 760
           TI V   + + L T++  H+D  + A +F +IYL L  V+SS
Sbjct: 539 TINVPRVIDSNLDTAIVPHFDHCESAILFYEIYLRLAEVLSS 580


>12_02_1271 +
           27472457-27473030,27473122-27473197,27473277-27473392,
           27473840-27474354
          Length = 426

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 382 NIHIVMRNKKDTY*APTLVLPMFHDRQCPLYVRQAYLSASWD 507
           N+H++ R    TY  PT+V    H     LY  Q +    WD
Sbjct: 135 NVHVIQRANLVTYRGPTMVANTLHAAAAFLYTNQ-HPHLEWD 175


>03_06_0282 -
           32824950-32825135,32825247-32825505,32825651-32825901,
           32826309-32826425,32826613-32826687,32826788-32827009,
           32827396-32827509,32827694-32827801
          Length = 443

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +2

Query: 32  RQMLAMGFTNQGGWLVELLEKKDGNIAAVLDL 127
           ++ +  GF N G W  +L+ +  G + A+ D+
Sbjct: 207 QRFVIQGFGNVGSWAAQLISEAGGKVIAISDV 238


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,925,170
Number of Sequences: 37544
Number of extensions: 280728
Number of successful extensions: 584
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)