Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0001
         (734 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0750 - 6754126-6755248,6755331-6755791                           29   5.1  
10_06_0095 + 10609102-10609593                                         29   5.1  
10_06_0092 + 10595021-10595515                                         28   8.8  

>12_01_0750 - 6754126-6755248,6755331-6755791
          Length = 527

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 113 WLLDCGLLFKRFHLDIIEYESF 48
           WLL C L F+ FHL +  Y S+
Sbjct: 19  WLLSCLLHFQVFHLSLFPYPSY 40


>10_06_0095 + 10609102-10609593
          Length = 163

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -1

Query: 266 SKDAMLHSNLDKFKDNMVAYPEEPCNLATT 177
           S D     NLD+F+      P EPCN+  T
Sbjct: 73  SHDYFEKGNLDRFRGTGDCMPSEPCNMVLT 102


>10_06_0092 + 10595021-10595515
          Length = 164

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 242 NLDKFKDNMVAYPEEPCNLATT 177
           NLD+F+      P EPCN+  T
Sbjct: 82  NLDRFRGAGACMPSEPCNMVLT 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,792,227
Number of Sequences: 37544
Number of extensions: 349271
Number of successful extensions: 577
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)