Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0071
         (797 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0917 - 29404341-29404519,29404610-29404744,29404898-294052...    29   3.2  

>04_04_0917 -
           29404341-29404519,29404610-29404744,29404898-29405225,
           29405313-29405532,29405653-29406647,29407233-29407493,
           29407534-29407872,29409309-29409497
          Length = 881

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 25/82 (30%), Positives = 39/82 (47%)
 Frame = +1

Query: 352 NRVTKILRPPVVRRRDGKSQQLQLTGNRKSLRLSDAYHKFKKRIYFIHD*LTRQTSQCLN 531
           NR+ K LR   +   DG    LQ   N+ S  + +   ++K ++  + D  + Q SQCL 
Sbjct: 227 NRIWKCLR---LGANDGNLANLQ---NKSSTNMVNLVRQYKPKV--VED-NSSQVSQCLK 277

Query: 532 RLIKDLTLLYKINLKQTKNNPV 597
               D   L K+NL  ++ N V
Sbjct: 278 HGSMDFLGLEKLNLNASQLNAV 299


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,152,850
Number of Sequences: 37544
Number of extensions: 277318
Number of successful extensions: 491
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)