Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0064
         (834 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396           28   8.0  
08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135     28   8.0  
01_05_0645 - 23899579-23904483                                         28   8.0  

>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
          Length = 1357

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +2

Query: 383 FGDLFRNGIRI--GGSINYHKLDI 448
           F +  RN +R   GGSINYH LDI
Sbjct: 365 FAEKVRNSLRKEGGGSINYHYLDI 388


>08_02_1187 - 25036023-25038443,25038636-25039939,25040033-25040135
          Length = 1275

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +2

Query: 383 FGDLFRNGIRI--GGSINYHKLDI 448
           F +  RN +R   GGSINYH LDI
Sbjct: 684 FAEKVRNSLRKEGGGSINYHYLDI 707


>01_05_0645 - 23899579-23904483
          Length = 1634

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = +2

Query: 383 FGDLFRNGIRI--GGSINYHKLDI 448
           F +  RN +R   GGSINYH LDI
Sbjct: 604 FAEKVRNSLRKEGGGSINYHYLDI 627


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,150,876
Number of Sequences: 37544
Number of extensions: 303371
Number of successful extensions: 453
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)