Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0056
         (481 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0126 - 13143485-13144117,13144204-13145238                       29   2.6  
07_01_1174 + 11097044-11097070,11097950-11098096,11098381-110984...    27   6.0  

>10_07_0126 - 13143485-13144117,13144204-13145238
          Length = 555

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 374 VKHEYDIKAKPPCFISRRFFPPRGGARYPIR 466
           + H+ ++ A P  F   RF P  GGA   +R
Sbjct: 449 ITHDGEVWADPEAFAPERFIPSEGGADVDVR 479


>07_01_1174 +
           11097044-11097070,11097950-11098096,11098381-11098424,
           11098915-11098952,11099787-11099877,11100873-11100978,
           11101062-11101132,11101221-11101290,11101547-11101609,
           11101883-11102058,11102104-11102128,11102729-11102800,
           11102903-11103004,11103089-11103163,11103749-11103871,
           11104320-11104433,11106012-11106053,11106328-11106444,
           11106983-11107039,11107424-11107441
          Length = 525

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +3

Query: 306 AVMLFGCENCFNSFVPNPFASEK*STSMISKQNLRVSYQDGFFLLEGGPGT 458
           AVM+FG    F  F+P    S    ++++SKQ      Q+    LEG   T
Sbjct: 157 AVMVFGLVFAFGDFLPYGSVSPSKESTVVSKQLSEEEIQNFKTALEGFEAT 207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,426,471
Number of Sequences: 37544
Number of extensions: 202110
Number of successful extensions: 323
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)