Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0053
         (418 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644...   116   8e-27
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694...   101   2e-22
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679     69   2e-12
02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168     29   1.1  
04_01_0483 + 6343599-6343778,6343886-6344011,6344096-6344173,634...    29   2.0  
04_01_0480 + 6279576-6279755,6279863-6279988,6280074-6280151,628...    29   2.0  
03_02_0488 - 8824980-8825267,8825364-8827775                           29   2.0  
11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,778...    28   3.5  
04_01_0485 + 6389646-6389665,6390063-6390123,6390231-6390356,639...    28   3.5  
01_01_0823 - 6407635-6407731,6407786-6407857,6409766-6409872           27   6.0  
12_01_0061 + 514798-515967                                             27   8.0  

>03_02_0683 +
           10363963-10364037,10364112-10364185,10364312-10364435,
           10365047-10365229,10365478-10365600
          Length = 192

 Score =  116 bits (279), Expect = 8e-27
 Identities = 62/126 (49%), Positives = 88/126 (69%), Gaps = 2/126 (1%)
 Frame = +3

Query: 9   KIIKASGAEADSFETSISQALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 182
           KI K  G E   FE S++QA  +LE  N +LK++L++LYI  A ++++  N+K+++I+VP
Sbjct: 7   KIQKEKGLEPSEFEDSVAQAFFDLENGNQELKSELKDLYINNAVQMDIAGNRKAVVIHVP 66

Query: 183 MPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSV 362
               KAF+KI +RLVRELEKKFSGK VV V  R+I+  P   + V    +RPR+RTLT+V
Sbjct: 67  YRLRKAFKKIHVRLVRELEKKFSGKDVVIVATRRIVRPPKKGSAV----QRPRTRTLTAV 122

Query: 363 YDAILE 380
           +D ILE
Sbjct: 123 HDGILE 128


>05_03_0610 -
           16167557-16167679,16168236-16168418,16169291-16169414,
           16169514-16169626,16169668-16169742
          Length = 205

 Score =  101 bits (242), Expect = 2e-22
 Identities = 56/108 (51%), Positives = 76/108 (70%), Gaps = 2/108 (1%)
 Frame = +3

Query: 63  QALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVREL 236
           QA  +LE  N +LK+ L++LYI  A +++L  N+K++IIYVP    KA++KI +RLVREL
Sbjct: 38  QAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVREL 97

Query: 237 EKKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILE 380
           EKKFSGK VV V  R+I+  P   + V     RPR+RTLT+V+D ILE
Sbjct: 98  EKKFSGKDVVLVATRRIVRPPKKGSAVV----RPRTRTLTAVHDGILE 141


>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
          Length = 129

 Score = 68.5 bits (160), Expect = 2e-12
 Identities = 39/88 (44%), Positives = 57/88 (64%)
 Frame = +3

Query: 117 LYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELEKKFSGKHVVFVGDRKILPK 296
           +Y+    ++   N K ++I+V     KAF+KI +RLV+ELEKKFSGK VVF   R+I+ +
Sbjct: 31  MYVCSQMDVAA-NWKVVVIHVLYHLCKAFKKIHVRLVKELEKKFSGKDVVFDATRRIV-R 88

Query: 297 PSHKTRVANKQKRPRSRTLTSVYDAILE 380
           P +K    +    PR+RTL +V+D ILE
Sbjct: 89  PLNKGSAVH---HPRTRTLITVHDGILE 113


>02_03_0395 - 18554596-18555090,18555194-18555566,18556026-18556168
          Length = 336

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = -1

Query: 331 FCLLATRVLWLGLGRILRSPTKTTCLPLNFFSSSRTSLI 215
           F L A+  L L L  +L   T   CLPL FF+ +  SL+
Sbjct: 4   FSLFASLSLSLSLSFVLADITDNPCLPLIFFAGNLISLM 42


>04_01_0483 +
           6343599-6343778,6343886-6344011,6344096-6344173,
           6344859-6344984,6345253-6345354,6345425-6345571,
           6345861-6345984,6346992-6347152
          Length = 347

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 10/45 (22%), Positives = 23/45 (51%)
 Frame = +3

Query: 69  LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 203
           LVE+    D   ++ + Y+     + L++K  +++Y+   K+  F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPHRVRLYSKDDVLLYIKEMKISGF 157


>04_01_0480 +
           6279576-6279755,6279863-6279988,6280074-6280151,
           6280847-6280972,6281244-6281345,6281416-6281490,
           6281852-6281975,6283005-6283107,6283546-6283617,
           6283662-6283788,6284125-6284180,6284438-6284453
          Length = 394

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +3

Query: 69  LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 203
           LVE+    D   ++ + Y+     + L +K  ++IY+   K+  F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLIYIKEMKISGF 157


>03_02_0488 - 8824980-8825267,8825364-8827775
          Length = 899

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
 Frame = +3

Query: 18  KASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIY-VPMPKL 194
           ++SG   + FET +S A++E+E N+ L        +  +K+I  H++   I Y  P+P +
Sbjct: 305 QSSGVTGEVFETLVSSAVMEMERNASLSP------VGFSKDIGQHHEFPRIPYSCPLPIM 358

Query: 195 KAFQKI 212
            + +++
Sbjct: 359 DSSEEL 364


>11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,
            7782225-7782324,7782720-7782801,7782928-7782940,
            7783621-7783681
          Length = 1433

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = -3

Query: 341  AWPLLFVSNTSFVAGLRQDLTVSNKDYMFTTELLFELTDKPDLNLLKGLQF 189
            AW  L +S+++ ++     L +S KD+M   +L FE  D+P +       F
Sbjct: 1167 AWKSLAISSSAMLS-----LMLSIKDFMLPEKLCFEQYDEPSITFQSSANF 1212


>04_01_0485 +
           6389646-6389665,6390063-6390123,6390231-6390356,
           6390441-6390518,6391304-6391429,6391630-6391731,
           6391802-6391948,6392237-6392360,6393608-6393737,
           6393908-6394130
          Length = 378

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 10/45 (22%), Positives = 22/45 (48%)
 Frame = +3

Query: 69  LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 203
           LVE+    D   ++ + Y+     + L +K  +++Y+   K+  F
Sbjct: 80  LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLLYIKEMKISGF 124


>01_01_0823 - 6407635-6407731,6407786-6407857,6409766-6409872
          Length = 91

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 66  ALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIY 176
           A++E+E N DL +    L  T+  E   H + S++IY
Sbjct: 2   AILEIEDNDDLLSLPGSLANTRIGESPSHQRDSLLIY 38


>12_01_0061 + 514798-515967
          Length = 389

 Score = 26.6 bits (56), Expect = 8.0
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -1

Query: 412 HYRA-NWVPGPPSRIASYTEVNVL 344
           H RA +W+P PP   ASYT  N++
Sbjct: 181 HERAPSWLPLPPLPSASYTHANLV 204


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,448,725
Number of Sequences: 37544
Number of extensions: 222404
Number of successful extensions: 692
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)