Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= cesb0045
         (841 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0330 + 2566662-2566740,2566821-2566911,2567003-2567057,256...    30   2.0  
05_02_0074 - 6351819-6352073,6352601-6352648                           29   4.6  
02_02_0457 + 10503801-10507358                                         29   6.1  

>03_01_0330 + 2566662-2566740,2566821-2566911,2567003-2567057,
            2567166-2567297,2567517-2567567,2567769-2567840,
            2568590-2568680,2568988-2569066,2569147-2569210,
            2569917-2570020,2570182-2570287,2572080-2572157,
            2572649-2572801,2573039-2573128,2573284-2573349,
            2573485-2573583,2573660-2573734,2574455-2574514,
            2574909-2574998,2575202-2575323,2575462-2575591,
            2575662-2575741,2576167-2576302,2577005-2577086,
            2578475-2578620,2578796-2578876,2578994-2579094,
            2579770-2580008,2580100-2580209,2580518-2580646,
            2580728-2580802,2581455-2581586,2582298-2582470,
            2582566-2582688,2582771-2582831,2582910-2583005,
            2583251-2583351,2584014-2584119,2584673-2584786,
            2584888-2584962,2585619-2585711,2585883-2585954,
            2586253-2586338,2586434-2586527,2586596-2586703,
            2586782-2587021
          Length = 1579

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/69 (20%), Positives = 33/69 (47%)
 Frame = -2

Query: 792  INDLPEHIHYPCSIFADDIAVVITKDATLDLNDKINATVSKVIDWMNKNNLKANLDKTRY 613
            +ND+     Y      +DI  +I ++A++D  +  +  VS +   ++K+ +    + T +
Sbjct: 973  VNDIDLESSYSALSSLEDIVSIIRREASIDQAEVFHRVVSSLCVLLSKDEISCLAENTNH 1032

Query: 612  MQLYNRHKF 586
              ++N   F
Sbjct: 1033 TVVFNEVLF 1041


>05_02_0074 - 6351819-6352073,6352601-6352648
          Length = 100

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = -2

Query: 471 CSKLNRFSYALWRLTKICNLKTALQAYHG----YVASNIRYCIPL 349
           C + N      + L+ +C+ + AL  +      Y  SN RYCIPL
Sbjct: 47  CKRCNGLLKKAYELSMLCDAEVALIVFSSRGRLYEYSNNRYCIPL 91


>02_02_0457 + 10503801-10507358
          Length = 1185

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 498  SWNLHIDLICSKLNRFSYALWRLTKI 421
            SWNL  D+ C  L    ++LW +T I
Sbjct: 940  SWNLLGDIECCSLTSLVFSLWHVTSI 965


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,424,472
Number of Sequences: 37544
Number of extensions: 382286
Number of successful extensions: 749
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)