Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0033
         (698 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0026 - 5086596-5086755,5087035-5087105,5087407-5087466,508...   165   3e-41
02_01_0361 - 2600398-2602780,2602815-2603479,2603553-2603981           32   0.50 
02_01_0353 + 2545982-2549833                                           32   0.50 
03_06_0609 - 35042276-35042388,35042476-35042527,35042624-350427...    29   3.5  
08_01_0319 + 2848751-2848762,2849516-2850449,2850476-2851234,285...    29   4.7  
04_04_1570 - 34492944-34493159,34493668-34493842,34493964-344940...    28   6.2  

>03_02_0026 -
           5086596-5086755,5087035-5087105,5087407-5087466,
           5087625-5087684,5088012-5088054,5088130-5088221,
           5088304-5088372,5088458-5088502,5089209-5089317,
           5089579-5089679,5089769-5089861,5089936-5089996,
           5090084-5090187,5091592-5091972
          Length = 482

 Score =  165 bits (401), Expect = 3e-41
 Identities = 81/158 (51%), Positives = 108/158 (68%)
 Frame = +2

Query: 221 AIVNENVSLVISRQLLTDVSTHLALLADNVSQEVSHFALDVIQPRVISFEEQVASIRQHL 400
           A+V++ V LV+SRQLL   +  L  L     +EV+H+AL  IQPRV+SFEEQV  IR+ L
Sbjct: 76  AVVSDEVPLVVSRQLLQTFAQELGRLEPEAQKEVAHYALTQIQPRVVSFEEQVVVIREKL 135

Query: 401 ADIYERNQNWKEAANVLVGIPLETGQKQYSVDYKLETYLKIARLYLEVDDPVQAEAFVNR 580
           A++YE  Q W +AA +L GI L++G +      KL   ++IARLYLE DD V AEAF+N+
Sbjct: 136 AELYESEQQWSKAAQMLSGIDLDSGIRMLDDTNKLSKCVQIARLYLEDDDSVNAEAFINK 195

Query: 581 ASLLQAETTNEQLQIYYKVCYARVLDYRRKFIEAAQRY 694
           AS L   +  E L + YKVCYAR+LD +R+F+EAA RY
Sbjct: 196 ASFLVTNSHQELLNLQYKVCYARILDLKRRFLEAALRY 233


>02_01_0361 - 2600398-2602780,2602815-2603479,2603553-2603981
          Length = 1158

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
 Frame = +2

Query: 128  KDQAEKYRNVLMEILKSTEQELSES-LKAFIEAIVNENVSLVISRQLLTDVSTHL---AL 295
            KD++E YR ++ME ++     L  S + A +E ++ + +      Q   D +  L     
Sbjct: 711  KDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGA 770

Query: 296  LADNVSQEVSHFALDVIQPRVISFEEQVASIRQHLADIYER 418
            + + + Q V  +   +          + A +RQ  AD+  R
Sbjct: 771  VVNALGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISR 811


>02_01_0353 + 2545982-2549833
          Length = 1283

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 22/101 (21%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
 Frame = +2

Query: 128  KDQAEKYRNVLMEILKSTEQELSES-LKAFIEAIVNENVSLVISRQLLTDVSTHL---AL 295
            KD++E YR ++ME ++     L  S + A +E ++ + +      Q   D +  L     
Sbjct: 836  KDESEPYRRMVMETIEKVVANLGASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGA 895

Query: 296  LADNVSQEVSHFALDVIQPRVISFEEQVASIRQHLADIYER 418
            + + + Q V  +   +          + A +RQ  AD+  R
Sbjct: 896  VVNALGQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISR 936


>03_06_0609 -
           35042276-35042388,35042476-35042527,35042624-35042725,
           35043546-35043745,35045258-35045336,35045541-35045595,
           35045947-35046122,35046386-35046988,35047077-35047265,
           35048150-35048201,35048289-35048356,35048873-35048911,
           35048912-35048970,35049639-35049782,35050136-35050238,
           35050368-35050467,35050596-35050612
          Length = 716

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +2

Query: 407 IYERNQNWKEAANVLVGIPLETGQKQYSVDYKLETYLKIARLY 535
           + +R +N ++AANV +   L+  QK YSVD+     L+ A  +
Sbjct: 461 LLKRYENNRKAANVAMAALLDGFQKMYSVDFGPLNVLRAAAFH 503


>08_01_0319 +
           2848751-2848762,2849516-2850449,2850476-2851234,
           2851793-2851850,2851900-2852179
          Length = 680

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 291 HCWLIMFHRRFPTLHLMLYNPELFHLKNRWP 383
           H WL++ H    T   ML   +LFHL    P
Sbjct: 481 HVWLLLAHAGMETFPEMLQRRQLFHLPTEEP 511


>04_04_1570 -
           34492944-34493159,34493668-34493842,34493964-34494068,
           34494454-34494623,34494760-34494830,34494950-34496799,
           34497003-34497052,34497147-34497263
          Length = 917

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 19/67 (28%), Positives = 37/67 (55%)
 Frame = -3

Query: 390 LILATCSSNEITLGCITSSAKWETSCETLSASSAKCVLTSVKSCLEITRLTFSLTIASMN 211
           LI +T  S+EI L   +  A +   CE  ++++++C+ ++  S L  + L    T +S N
Sbjct: 257 LISSTSCSDEIEL---SRHASYFECCEQSNSNNSRCLDSASTSTLTDSSLDGHYTDSSWN 313

Query: 210 AFNDSDN 190
             +D++N
Sbjct: 314 FSDDTEN 320


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,774,493
Number of Sequences: 37544
Number of extensions: 348487
Number of successful extensions: 964
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)