Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0032
         (425 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0654 - 4900509-4900518,4900626-4900709,4900844-4901377,490...    31   0.39 
08_01_0304 - 2502760-2502774,2502844-2502921,2503035-2503103,250...    29   1.2  
05_04_0438 + 21244735-21244782,21245089-21245274,21245307-212453...    27   4.8  
01_06_1749 - 39636951-39638102                                         27   6.3  
08_01_0033 + 244930-245105,245297-245344,245835-246539,246652-24...    27   8.3  
04_04_1344 + 32787574-32787632,32788488-32789070,32789211-327894...    27   8.3  

>07_01_0654 -
           4900509-4900518,4900626-4900709,4900844-4901377,
           4901462-4901619,4901703-4901832,4901918-4901999,
           4902097-4902230,4902314-4902410,4902512-4902788,
           4902881-4903024
          Length = 549

 Score = 31.1 bits (67), Expect = 0.39
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +3

Query: 51  LAGTNFSNEIRTQQMFTIDFHGEGITSC-NKNQTRKIIICVITGGRTSCESARVGTTAPP 227
           L+GT+   +    ++  +D  G GIT+C  +N+ +K    ++ G      + RV      
Sbjct: 28  LSGTSKRRDFTALELILVDEEGVGITACVGENEIQKFSTSIVEGHAYFLRNFRVSRQTKK 87

Query: 228 ISAV 239
           ++AV
Sbjct: 88  LNAV 91


>08_01_0304 -
           2502760-2502774,2502844-2502921,2503035-2503103,
           2503200-2503289,2503400-2503517,2505548-2505678,
           2505756-2506025,2507175-2507308,2507635-2508088
          Length = 452

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +3

Query: 21  IEPCTGVRISLAGTNFSNEIRTQQMFTIDFHGE 119
           I  CTGV I   G N   +I T      DFHGE
Sbjct: 157 ISRCTGVVIGWDGANKRAKILTAASVVCDFHGE 189


>05_04_0438 +
           21244735-21244782,21245089-21245274,21245307-21245384,
           21245385-21245678,21246137-21246262,21246935-21247168,
           21247534-21248061
          Length = 497

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 310 DIVLRSQYSHNGCPTLQTETH 248
           D++ RS   H   P  QTETH
Sbjct: 477 DVIRRSASGHEAAPPFQTETH 497


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 291 SIVTTAAPPFKPKRITA 241
           S+ + AAPPF P RIT+
Sbjct: 165 SVASAAAPPFDPSRITS 181


>08_01_0033 +
           244930-245105,245297-245344,245835-246539,246652-246796,
           246893-247240,247882-248721,248786-248832,249470-249596,
           249672-249836,249973-251370,251453-251713,251802-252161
          Length = 1539

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 335 NVNEPHTLRYSSKVSV*SQRLPHP 264
           +V E  ++RY SK  + SQRLP P
Sbjct: 592 SVGEDASIRYDSKPPLHSQRLPSP 615


>04_04_1344 +
           32787574-32787632,32788488-32789070,32789211-32789423,
           32789884-32790173,32791201-32791312,32791394-32791630,
           32791714-32792394
          Length = 724

 Score = 26.6 bits (56), Expect = 8.3
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +2

Query: 233 CREAVMRFGLKGGAAVVTILRP*NYISRCVAHLRCRCLW 349
           C     +FG+   A V  ILRP N+IS+      C C W
Sbjct: 342 CSTNSFQFGIFEQALVSGILRPGNFISKI-----CYCFW 375


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,821,506
Number of Sequences: 37544
Number of extensions: 251894
Number of successful extensions: 441
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 790518168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)