Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0028
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1109 + 26151421-26153601                                         30   2.0  
11_06_0184 - 21006659-21009823                                         28   6.0  
06_01_0785 - 5873244-5873357,5873458-5873562,5874333-5874424,587...    28   8.0  
01_06_1718 - 39408179-39408427,39409102-39409217,39409460-394096...    28   8.0  

>12_02_1109 + 26151421-26153601
          Length = 726

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/44 (40%), Positives = 27/44 (61%)
 Frame = -1

Query: 633 LVIKDLKLMSEKFSSGDRHIESHSVGRALTRRSDDLLHVSQDRL 502
           L+++  +L S   ++G+   ES SVGRA+ R  DDL   S+ RL
Sbjct: 19  LLLQPRRLCSSA-TAGELASESASVGRAVYRVDDDLAEESRSRL 61


>11_06_0184 - 21006659-21009823
          Length = 1054

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -2

Query: 638 NSWSLKILNS*AKNSRLVTAILKVIAWVGLSQGGPTTCCMSHR 510
           NS   K LNS + +SRL+  +L +    GL  G   T C  H+
Sbjct: 690 NSNIKKFLNSLSSSSRLLLTVLDLEGRKGLKAGDLHTVCKIHK 732


>06_01_0785 -
           5873244-5873357,5873458-5873562,5874333-5874424,
           5874525-5874594,5875080-5875202,5875287-5875372,
           5875547-5875648,5875874-5876096,5876217-5876282,
           5876407-5876497,5876574-5876701,5877734-5877749,
           5878171-5878318,5878440-5878511,5878586-5878690,
           5879122-5879291,5880093-5880424
          Length = 680

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -1

Query: 324 KISSQNEQLAWAEWNSSNLYQKHDSTWKG 238
           +I   N+++AW EW+  N+       W G
Sbjct: 242 RIDHNNKRMAWIEWSHPNMPWDKSELWVG 270


>01_06_1718 -
           39408179-39408427,39409102-39409217,39409460-39409603,
           39409700-39410930,39411213-39411494
          Length = 673

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 228 CVSCPSTCCRASGKGSTSSIRPRP 299
           CV C   C R  G  S+SS + RP
Sbjct: 52  CVDCTKRCIRIHGMASSSSEKARP 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,504,809
Number of Sequences: 37544
Number of extensions: 383158
Number of successful extensions: 842
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)