Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0025
         (644 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0875 + 21212413-21212758,21215931-21217357                       28   5.5  
07_03_1752 - 29218348-29218524,29218593-29218736,29218957-292191...    28   7.3  
04_04_0092 - 22759791-22760676,22761446-22761813,22762202-227622...    28   7.3  
04_04_0089 - 22724971-22725035,22725403-22725466,22725602-227256...    28   7.3  
04_03_0708 + 18888085-18889337,18889583-18889661,18890458-18890781     28   7.3  
11_06_0768 + 27129007-27129038,27129140-27129220,27129723-271300...    27   9.7  

>10_08_0875 + 21212413-21212758,21215931-21217357
          Length = 590

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +3

Query: 537 SGFGMSSPHRCFPSAMTCPS--SNETCVE 617
           +GFG  S  RC+ SA  C +  S++ CVE
Sbjct: 79  AGFGNRSQDRCYASAENCSTAVSSQLCVE 107


>07_03_1752 -
           29218348-29218524,29218593-29218736,29218957-29219148,
           29219225-29219440,29219873-29220010,29220137-29220232,
           29221204-29221357,29221976-29222098,29222291-29222418,
           29222669-29222773,29223396-29223437,29223631-29223746,
           29223805-29223916
          Length = 580

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
 Frame = -3

Query: 216 TCSSHECLPDEGNRTHDPRRNSRGR*LLHHRVSQQYKHFQIM-FILRTRYLKIDNFNLLT 40
           TC     L DEG +   P   S GR +LH +   ++    ++  I+   Y   + FN + 
Sbjct: 189 TCEKITWLLDEGEKWLKPEYRSCGRSMLHKKAKVEFYPLGVIGAIVSWNYPFHNVFNPML 248

Query: 39  ASSNNANFAV 10
           A+  + N AV
Sbjct: 249 AAIFSGNAAV 258


>04_04_0092 -
           22759791-22760676,22761446-22761813,22762202-22762207,
           22763365-22763603,22764808-22765339
          Length = 676

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/32 (53%), Positives = 21/32 (65%)
 Frame = +1

Query: 331 ILLWGRITVRNLFQVILNFIVT*GVVRDDSII 426
           I L+G I VR+L   +LN+IV  G  RDD II
Sbjct: 225 IELYGYIAVRDLQDPLLNYIVKIG--RDDPII 254


>04_04_0089 -
           22724971-22725035,22725403-22725466,22725602-22725688,
           22726775-22726789,22736269-22736685,22738235-22738473,
           22739673-22740223,22740440-22740540
          Length = 512

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 17/32 (53%), Positives = 21/32 (65%)
 Frame = +1

Query: 331 ILLWGRITVRNLFQVILNFIVT*GVVRDDSII 426
           I L+G I VR+L   +LN+IV  G  RDD II
Sbjct: 265 IELYGYIAVRDLQDPLLNYIVKIG--RDDPII 294


>04_03_0708 + 18888085-18889337,18889583-18889661,18890458-18890781
          Length = 551

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 497 STMRFQRYFLPGTIRLWNELPPPVFP 574
           +T+R QR +L  T+  W+ LP P +P
Sbjct: 521 TTLRPQRMWLASTVSGWDGLPRPTWP 546


>11_06_0768 + 27129007-27129038,27129140-27129220,27129723-27130089,
            27130165-27130255,27130515-27130595,27130764-27131830,
            27132060-27132071,27132465-27133209,27133210-27135244,
            27135712-27135787,27135925-27136029,27137080-27137166
          Length = 1592

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 619  YSTQVSFEEGHVIALGKHRWGELIPKP 539
            +  QV FE+GH++      W   +P P
Sbjct: 1158 FKEQVKFEDGHLLIWNPREWEYQLPSP 1184


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,001,014
Number of Sequences: 37544
Number of extensions: 382740
Number of successful extensions: 815
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)