Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0022
         (690 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0062 + 20370608-20370977,20371062-20371541,20371661-203717...    30   2.0  
01_05_0003 - 16841745-16841912,16842005-16842259,16842938-168430...    29   4.6  
10_08_0935 + 21670372-21671396,21672057-21672987                       28   6.1  
02_04_0589 - 24117688-24119282,24119881-24119908,24120004-241200...    28   6.1  
08_02_0989 + 23368902-23369363,23370299-23370304                       28   8.0  
04_04_0961 + 29715938-29716034,29716918-29717133,29717438-297177...    28   8.0  

>03_05_0062 +
           20370608-20370977,20371062-20371541,20371661-20371731,
           20371836-20371912,20372076-20372223,20372346-20372507,
           20372743-20372940
          Length = 501

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = -1

Query: 300 ERVEHGAAGGERDAREEVAGEVRQGHQQLRVLVGLRIDARHHCVFH 163
           ++++ G+  GE++ R EV    R  H+ L  LVG  +   HH + +
Sbjct: 196 KQLKVGSGQGEKEFRAEVDTISRVHHRHLVTLVGYSVTEHHHLLVY 241


>01_05_0003 -
           16841745-16841912,16842005-16842259,16842938-16843085,
           16843740-16843854,16844294-16844465,16844481-16844617,
           16844738-16844792
          Length = 349

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 4   TANTTTMNVPPQVTGTMNGHSTSHSVDTRK 93
           T+N  T+N+P QVTG +  + T H   T++
Sbjct: 282 TSNGGTINLPDQVTGEIQYNLTEHIAQTQE 311


>10_08_0935 + 21670372-21671396,21672057-21672987
          Length = 651

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +1

Query: 16  TTMNVPPQV-TGTMNGHSTSHSVDTRKRLTPIPDINTTGNHTPYK 147
           T M+ PP V T  M  HS  +S ++ KR+   P++ + G +  ++
Sbjct: 605 TVMSKPPPVDTVEMAIHSNCNSTNSSKRMAGPPEVESGGKYLDFE 649


>02_04_0589 -
           24117688-24119282,24119881-24119908,24120004-24120089,
           24120196-24120220,24121188-24121326,24122344-24122567,
           24122674-24122691
          Length = 704

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 186 HQFEALPVHGAADDPAGP 239
           + F+AL   GAA+DPAGP
Sbjct: 533 YHFKALAFRGAANDPAGP 550


>08_02_0989 + 23368902-23369363,23370299-23370304
          Length = 155

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 19/51 (37%), Positives = 23/51 (45%)
 Frame = +3

Query: 75  LRGHSQKAYTDTRHQHYWQPYAV*GTKGVSGKHNGALHQFEALPVHGAADD 227
           LRGH   A  D RH+   +P    G  GV  K    L +      HGAAD+
Sbjct: 94  LRGHDGAAVADGRHRRAARPAGSGGGGGVRWKEMLGLKR-PGHRKHGAADE 143


>04_04_0961 +
           29715938-29716034,29716918-29717133,29717438-29717776,
           29718247-29719274,29719465-29719551,29719636-29720043,
           29720394-29720558,29720742-29721036,29721131-29721345,
           29721838-29722143,29722474-29722537,29722644-29722883,
           29722959-29723062
          Length = 1187

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 20/66 (30%), Positives = 32/66 (48%)
 Frame = +1

Query: 247 HFFPRVSLTTCRAMLDALGLILYRPNSTQLQVLRNSGKCKSAAAGENGMALVQVRDVMHH 426
           H   R+  T  +A L   GL+    NST+LQ L+   +  S     +  AL+ +  +M  
Sbjct: 9   HVLARIPETAQQAFL-RWGLLRDSSNSTKLQHLQEWQEMYSPCFWMDAFALIHLIFIMSI 67

Query: 427 MLQFKY 444
           ++QF Y
Sbjct: 68  LVQFLY 73


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,033,510
Number of Sequences: 37544
Number of extensions: 274031
Number of successful extensions: 997
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 997
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)