Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0021
         (416 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1294 - 36076524-36076554,36076821-36076891,36077221-360772...   103   6e-23
05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018    103   8e-23
07_03_0078 - 13147741-13148913                                         30   0.65 
09_01_0024 + 438288-438542,439020-439069,440096-440351                 29   2.0  
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277...    28   2.6  
03_06_0682 - 35516081-35518303                                         28   3.5  
11_02_0038 - 7631462-7634428,7635975-7636250                           27   4.6  

>01_06_1294 -
           36076524-36076554,36076821-36076891,36077221-36077275,
           36077363-36077562,36078614-36078715
          Length = 152

 Score =  103 bits (247), Expect = 6e-23
 Identities = 56/106 (52%), Positives = 69/106 (65%)
 Frame = +3

Query: 15  PRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQ 194
           P+  + VG+ KGH  TK          + +  RP+  KG  TK   FVR L+REVVG A 
Sbjct: 6   PKSGLFVGINKGHVVTK----------RELPPRPSDRKGKSTKRVNFVRGLIREVVGFAP 55

Query: 195 YEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 332
           YEKR  ELLKV KDKRALK  KR+LGTH RAK+KREE++ V+ +MR
Sbjct: 56  YEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMAGVIRKMR 101


>05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018
          Length = 113

 Score =  103 bits (246), Expect = 8e-23
 Identities = 56/106 (52%), Positives = 69/106 (65%)
 Frame = +3

Query: 15  PRFEIAVGLRKGHKTTKISAGRKGITDKAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQ 194
           P+  + VG+ KGH  TK          + +  RP+  KG  TK   FVR+L+REV G A 
Sbjct: 6   PKSGLFVGINKGHVVTK----------RELPPRPSDRKGKSTKRVTFVRNLIREVAGFAP 55

Query: 195 YEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNVLAQMR 332
           YEKR  ELLKV KDKRALK  KR+LGTH RAK+KREE++ VL +MR
Sbjct: 56  YEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMAGVLRKMR 101


>07_03_0078 - 13147741-13148913
          Length = 390

 Score = 30.3 bits (65), Expect = 0.65
 Identities = 13/25 (52%), Positives = 16/25 (64%)
 Frame = -2

Query: 118 AGLILMALSVIPLRPADILVVLWPF 44
           AGL+  AL VIP  P  + +V WPF
Sbjct: 71  AGLLYFALVVIPALPGVLRLVAWPF 95


>09_01_0024 + 438288-438542,439020-439069,440096-440351
          Length = 186

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 14/42 (33%), Positives = 26/42 (61%)
 Frame = +3

Query: 189 AQYEKRAMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSN 314
           A++E R  E LK ++++ A K LKR+     + ++KR + +N
Sbjct: 122 AEFELRREERLKEAEERTAKKRLKRQKKKQRKKEKKRSKTNN 163


>04_04_1144 +
           31222556-31222633,31223238-31227665,31227724-31227789,
           31227790-31228014,31228097-31228255,31228393-31228551,
           31228855-31229013,31229371-31229490,31229604-31229825
          Length = 1871

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 20/76 (26%), Positives = 41/76 (53%)
 Frame = +3

Query: 96  KAIRIRPARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLKVSKDKRALKFLKRRLGT 275
           +A + + A L+ +    S+  ++LV E +G    EK+ +ELL +  +++  ++LK +   
Sbjct: 639 EAYQTKAASLEAVMESASEKEKELV-ESLGQITEEKKKLELLVLEYEEKTEEYLKEKQSL 697

Query: 276 HIRAKRKREELSNVLA 323
               +R + + S VLA
Sbjct: 698 E---ERLQSQESKVLA 710


>03_06_0682 - 35516081-35518303
          Length = 740

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 16/73 (21%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
 Frame = +3

Query: 114 PARLKGLQTKHSKFVRDLVREVVGHAQYEKRAMELLK----VSKDKRALKFLKRRLGTHI 281
           P  +  L+  +  F+++++     +++ EKR  ELL+    ++K           LG+ +
Sbjct: 324 PKEVHHLKDLNENFIKEIIERSAFNSEEEKRQSELLEMVGDIAKKCSGSPLAATALGSTL 383

Query: 282 RAKRKREELSNVL 320
           R K  ++E   +L
Sbjct: 384 RTKTTKKEWEAIL 396


>11_02_0038 - 7631462-7634428,7635975-7636250
          Length = 1080

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 234 DKRALKFLKRRLGTHIRAKRKREELSNV 317
           DK+ LKFL  R  TH +     E+++N+
Sbjct: 791 DKKHLKFLNLRCTTHTKESYTMEDITNI 818


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,629,968
Number of Sequences: 37544
Number of extensions: 172819
Number of successful extensions: 431
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 429
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)