Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-0017
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0053 + 10673264-10674510,10674552-10674576,10674802-106748...    28   5.9  
10_08_0645 - 19562886-19564484                                         28   7.8  

>01_02_0053 +
           10673264-10674510,10674552-10674576,10674802-10674886,
           10675074-10675084
          Length = 455

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = -1

Query: 672 EEEGDDSQFKDEDNEEGE 619
           EEEG D   +D+D+EEGE
Sbjct: 397 EEEGTDESDEDDDSEEGE 414


>10_08_0645 - 19562886-19564484
          Length = 532

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +2

Query: 497 GDGTTSPKWVSRRFVH 544
           GDG  SPKW S  F H
Sbjct: 186 GDGAPSPKWTSAPFTH 201


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,495,025
Number of Sequences: 37544
Number of extensions: 289417
Number of successful extensions: 889
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)