Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0087
         (396 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0254 - 2074095-2074100,2074389-2074462,2074572-2074633,207...    29   1.8  
08_02_1461 - 27299891-27301870                                         28   2.4  
01_06_1141 + 34845834-34845931,34846110-34846198,34846535-348466...    27   7.2  
09_04_0282 - 16367886-16368587,16369209-16369345,16369764-163698...    26   9.6  
04_03_0894 - 20619037-20620392                                         26   9.6  
03_06_0720 + 35739383-35739391,35739802-35740275,35740695-357411...    26   9.6  

>01_01_0254 -
           2074095-2074100,2074389-2074462,2074572-2074633,
           2074790-2075123,2075271-2075487,2075575-2075685,
           2076304-2076840
          Length = 446

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -1

Query: 165 RFGLKGGVAVVTILRPCNLYLKVGGAFTL*MSMGSSNHLTPG 40
           + G+ G + V+   R   + L +GG     ++MG + HL  G
Sbjct: 354 KLGILGALEVIDAARKARIALMIGGMVETRIAMGFAGHLAAG 395


>08_02_1461 - 27299891-27301870
          Length = 659

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 15/39 (38%), Positives = 18/39 (46%)
 Frame = +3

Query: 147 HPSNRNALLLHGRNRQGGGTYPRGLTRGPTTSNYRKYNY 263
           H ++    LL GR R GGG + RGL   P  S      Y
Sbjct: 282 HAADLRKKLLRGRRRGGGGGHRRGLFVFPLVSRMTGARY 320


>01_06_1141 +
           34845834-34845931,34846110-34846198,34846535-34846686,
           34847473-34847583,34847702-34847818,34847989-34848156,
           34848563-34848703
          Length = 291

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +1

Query: 139 GYPTLQTETHYCFTAEIGRAVVPTR-ADSQEVLPPVI 246
           GY  L   TH    AE+   V+ TR A +QE+L  ++
Sbjct: 206 GYEHLSDPTHILIEAELPADVIDTRLAQAQEILEDLL 242


>09_04_0282 -
           16367886-16368587,16369209-16369345,16369764-16369899,
           16370021-16370422
          Length = 458

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 13/40 (32%), Positives = 20/40 (50%)
 Frame = +3

Query: 135 QRLPHPSNRNALLLHGRNRQGGGTYPRGLTRGPTTSNYRK 254
           Q+ P  +    ++LH R+   GG Y   L R   T++Y K
Sbjct: 415 QKYPDSAIHAGIVLHDRDGVIGGGYTGALRRHRRTASYNK 454


>04_03_0894 - 20619037-20620392
          Length = 451

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = +2

Query: 95  PTLRYKLQGLSIVTTATPPFKPKRITASR 181
           P+   ++QG+ ++ +A P   P R+T++R
Sbjct: 235 PSYLSRMQGIHLLKSALPAMAPARLTSAR 263


>03_06_0720 +
           35739383-35739391,35739802-35740275,35740695-35741122,
           35741273-35741351
          Length = 329

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 177 HGRNRQGGGTYPRGLTRGPTTSNY 248
           HG+ R+GG   PRG T     S Y
Sbjct: 18  HGQQRRGGSPPPRGRTTSVYRSGY 41


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,945,333
Number of Sequences: 37544
Number of extensions: 279070
Number of successful extensions: 626
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)