Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0083
         (636 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600...    31   0.58 
09_02_0036 + 3217163-3217584,3217752-3218322                           30   1.3  
06_03_0885 + 25677243-25678157,25681064-25681705                       30   1.3  
07_03_0154 + 14509979-14512033                                         29   4.1  
03_05_1102 - 30413154-30414062,30414519-30415010                       28   7.1  
01_04_0124 + 16359695-16359734,16360217-16360453,16361133-163621...    28   7.1  
04_01_0312 + 4206400-4206627,4206661-4207269,4207425-4207902,420...    27   9.4  

>10_08_0141 +
           15159160-15159306,15159708-15159815,15159958-15160006,
           15160067-15160182,15160358-15160399,15161026-15161442,
           15162356-15162509,15162911-15162975,15163793-15163870,
           15163951-15164061,15164227-15164271,15164677-15164850,
           15165383-15166335,15166471-15166681,15167037-15167196,
           15168786-15169174
          Length = 1072

 Score = 31.5 bits (68), Expect = 0.58
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -1

Query: 573 NPGCANCWKGRSGAGLFAITPAAKGECAARRLSWVTP 463
           +PGC +CW    G G    +P  +   AA R +W  P
Sbjct: 18  SPGCHSCWGPGPGGGRRLPSPRRRPITAAARPTWAVP 54


>09_02_0036 + 3217163-3217584,3217752-3218322
          Length = 330

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +3

Query: 414 ITIHWPSFYNVV-TGKTLALPNLIALQH 494
           I+  W  F N+V +G TL++PN + LQH
Sbjct: 69  ISAGWSRFINLVQSGPTLSIPNYVLLQH 96


>06_03_0885 + 25677243-25678157,25681064-25681705
          Length = 518

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +2

Query: 425 LAVVLQRRDWENPGVTQLNRLAAHSPFAAGVIAKRPAPDRPFQQLAQPGL 574
           LA +L   DWE PG+    +L     F  GV  K     RP  ++  PG+
Sbjct: 469 LASLLFHFDWEVPGMADPTKLDMTEAFGIGVRRKADLIIRPILRVPVPGV 518


>07_03_0154 + 14509979-14512033
          Length = 684

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +2

Query: 473 QLNRLAAHSPFAAGVIAKRPAPDRPFQQLAQPGLGNG 583
           +L  L   S  AAGVI    AP+     +AQPG G+G
Sbjct: 110 RLATLYLSSAGAAGVIVPAAAPEASAGAVAQPGSGSG 146


>03_05_1102 - 30413154-30414062,30414519-30415010
          Length = 466

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 546 GRSGAGLFAITPAAKGECAARRLSWVTPGFSQSRRCK 436
           G SG GL  + P+A+GE +AR ++   P    +R C+
Sbjct: 409 GASGEGLVIVLPSAEGE-SARDVAVTLPAAVTARICR 444


>01_04_0124 +
           16359695-16359734,16360217-16360453,16361133-16362104,
           16362211-16362398,16362564-16363942,16364024-16365047,
           16365171-16365566,16367484-16367999,16368085-16368226,
           16369409-16369553,16371351-16371432,16371851-16371895,
           16372018-16372140
          Length = 1762

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = -1

Query: 177 PIGIYVNYVTHLETRVLSQFNSTTTTPAGLDRGWSGLVARMFLFLSLHDDIGHQP 13
           P+G  +      ++ +LS +NS  +     DR   GLV++   F+ L+ D+G  P
Sbjct: 58  PVGFTILKAGLNKSVLLSVYNSQNSRNGQADRSTHGLVSK---FVKLYPDLGFDP 109


>04_01_0312 +
           4206400-4206627,4206661-4207269,4207425-4207902,
           4208006-4208297,4209278-4209569,4210013-4210465
          Length = 783

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 426 WPSFYNVV-TGKTLALPNLIALQH 494
           W  F N+V +G TL+LP  + LQH
Sbjct: 133 WSRFTNLVQSGPTLSLPEYVLLQH 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,600,436
Number of Sequences: 37544
Number of extensions: 444023
Number of successful extensions: 1148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1148
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)