Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0079
         (456 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0134 - 13021294-13021350,13021478-13021658,13022383-130224...    30   1.0  
11_06_0295 + 22033367-22034947,22035030-22035137,22035230-220353...    28   3.1  

>08_02_0134 -
           13021294-13021350,13021478-13021658,13022383-13022433,
           13025134-13025187,13026154-13026248,13026565-13026888
          Length = 253

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 186 ILPSYWQVIIKYKLDRSQLAMLKDEFV*MHFGTKRFN 296
           IL  YW V+    + R  L M+K  +V   FG +R+N
Sbjct: 202 ILLFYWVVLFTVTMKRQILHMIKYRYVPFSFGKQRYN 238


>11_06_0295 +
           22033367-22034947,22035030-22035137,22035230-22035370,
           22035576-22035625,22036100-22036168,22036649-22036781,
           22037634-22037747,22037826-22038038,22038387-22038500,
           22038768-22038900,22039304-22039416,22040204-22040284,
           22040397-22040483
          Length = 978

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 33  KKHTILMSLLTTSCQKHKKPLKP 101
           KKHT  +SLL+  C KH++ + P
Sbjct: 410 KKHTDTVSLLSHMCSKHQRAVLP 432


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,827,661
Number of Sequences: 37544
Number of extensions: 146802
Number of successful extensions: 237
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)