Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0077
         (669 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476     30   1.5  
02_05_0969 + 33165396-33165935,33166352-33166883,33166988-331672...    30   1.5  

>04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476
          Length = 676

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 27/103 (26%), Positives = 40/103 (38%), Gaps = 1/103 (0%)
 Frame = -2

Query: 566 RTAGSGLAPDGPTHHQRPGLXXXXDEPKPSGXXXXXXXXXDNETQGGKPSKLLKPGTKRR 387
           R+A + + P  P H Q P         + S               GG P   ++    RR
Sbjct: 98  RSARTTVPPPAPRHRQSPERRLDRLASRRSSRAVTPRR---GTVDGGNPLSDMR--CPRR 152

Query: 386 YDDILSIRSG-RSNRSRASTATVGSKYKTGGKGIHRNLDSAAS 261
            DD    R G  S+ SR+ +    S  +  G+G+HR    AA+
Sbjct: 153 GDDSSMERGGGSSSSSRSLSREPSSAVQERGRGLHRGASPAAA 195


>02_05_0969 + 33165396-33165935,33166352-33166883,33166988-33167242,
            33167515-33167606,33167745-33167942,33168049-33168240,
            33168341-33168562,33168858-33169024,33169117-33169210,
            33169308-33169364,33169459-33169587,33169681-33169752,
            33170180-33170293,33170419-33170580,33170666-33170794,
            33171057-33171158,33171266-33171342,33171470-33171592,
            33171666-33172227
          Length = 1272

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = -1

Query: 255  ATLGGDYRPXXXXXXXXXXXKHDPYAYLPLSRTNLNKR--KKSVNSKQFKGIVKSKTK 88
            A  G DY             K DPYAY PL R  LN+R  +K+   K    ++K   K
Sbjct: 1189 AYTGHDYTSKKASGDLKKKDKMDPYAYWPLDRKLLNRRSDRKAAARKGMSSVMKVTKK 1246


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,145,696
Number of Sequences: 37544
Number of extensions: 241944
Number of successful extensions: 798
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)