Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0064
         (640 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0682 + 5974622-5974745,5976182-5976371,5976953-5977024,597...    31   1.0  
04_03_0144 + 11796550-11797178,11797808-11797902,11798053-117981...    29   3.1  
01_01_0920 + 7264498-7264573,7264705-7264745,7265339-7265408,726...    29   3.1  
08_02_1540 + 27694565-27694579,27696364-27696447,27696599-276967...    29   4.1  
11_04_0102 - 13491071-13491415,13491427-13491720,13491799-13492323     28   7.2  
04_04_1346 + 32798825-32798900,32799027-32799070,32799163-327992...    27   9.5  

>08_01_0682 +
           5974622-5974745,5976182-5976371,5976953-5977024,
           5977482-5977553,5977688-5977759,5977842-5977913,
           5978690-5978761,5978855-5978926,5979017-5979091,
           5979529-5979594,5979821-5979885,5979975-5980354,
           5980438-5980636,5980713-5980763,5980955-5981073,
           5981190-5981400,5981524-5981755,5981842-5981992,
           5982089-5982447,5982750-5982768
          Length = 890

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +2

Query: 350 LRSCRISSTISTLVQERLFSLRV-DVESNELIDSKPDIYCENFLQLFIVTAVRPLRMCTP 526
           LR+C+IS  + T+   +L  L + D   N+L  S P     N LQ  + + +  L+  TP
Sbjct: 251 LRNCKISDNLRTVNFSKLGRLTLLDFSYNQLTGSFPSWVTNNNLQFILPSGLNCLQQDTP 310


>04_03_0144 +
           11796550-11797178,11797808-11797902,11798053-11798102,
           11798382-11799293
          Length = 561

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = +1

Query: 163 VAALLGSCQSAHLNKHIKLLSDIDNSIENGVKQNLMDLINIYRSRKAPYRR 315
           +A L   CQS   +  + L+  + +S   G ++ +  L+N   SR + Y++
Sbjct: 307 LARLKPQCQSISDDVTVHLIQSVTSSTNTGARKEMQSLVNGLLSRSSVYQK 357


>01_01_0920 +
           7264498-7264573,7264705-7264745,7265339-7265408,
           7265500-7265648,7266143-7266238,7266326-7266396,
           7266510-7266571,7266651-7266714,7267608-7267692,
           7267777-7267903,7268016-7268080,7268739-7268796,
           7268927-7269066,7269624-7269693,7269910-7269981,
           7270188-7270234,7270468-7270566
          Length = 463

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +3

Query: 288 SITQGPLPSYAHTPGTTIELTC--EAAGSPAPSVHWFKNDSSVYE 416
           S  +GP P+  HT   T ++T     A S  P   W K+   +YE
Sbjct: 353 STERGPHPNIQHTENITQDMTARKHLAASVLPGAEWRKDGHLLYE 397


>08_02_1540 + 27694565-27694579,27696364-27696447,27696599-27696731,
            27696840-27696951,27697530-27697629,27697810-27697937,
            27698046-27698115,27698548-27698636,27698719-27698764,
            27698854-27698924,27699002-27699075,27699341-27699433,
            27699539-27699572,27699704-27699789,27702147-27702223,
            27702445-27702533,27702630-27702813,27703068-27703249,
            27703962-27704064,27704159-27704490,27704577-27705018,
            27705749-27705846,27706988-27707081,27707666-27707787,
            27708025-27708078,27708185-27708304,27708595-27708799,
            27708889-27709059,27709155-27709310,27709375-27709431,
            27709474-27709580,27709708-27709798,27709931-27710072,
            27710149-27710305,27710400-27710516,27710596-27710722,
            27710844-27711066,27711460-27711466,27711656-27711788
          Length = 1574

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 249  WCQAKSDGSHKYLSITQGPLPSYAHTPG 332
            WC+A+ DGS    +I  G    YA  PG
Sbjct: 1278 WCRAEDDGSFCIRNIVAGDYNLYAWVPG 1305


>11_04_0102 - 13491071-13491415,13491427-13491720,13491799-13492323
          Length = 387

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 3/66 (4%)
 Frame = +1

Query: 196 HLNKHIKLLSDIDNSIENGVKQNLMDLINIYRSRKAPYRRTH---ILPEPLLS*PAKLPD 366
           H N H  L  D+D    N     L D   IYR  + P RR+H      E        L D
Sbjct: 318 HYNGHPDLFRDVDI---NDAAYKLNDSRVIYRHSEVPIRRSHGKTAASEEAHQPAVSLRD 374

Query: 367 LQHHQY 384
           L H Q+
Sbjct: 375 LLHFQH 380


>04_04_1346 +
           32798825-32798900,32799027-32799070,32799163-32799256,
           32799914-32799981,32800105-32800275
          Length = 150

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 17/87 (19%), Positives = 42/87 (48%)
 Frame = +2

Query: 365 ISSTISTLVQERLFSLRVDVESNELIDSKPDIYCENFLQLFIVTAVRPLRMCTPASPPRA 544
           ++S +  L+  R   +R+D + +E I++K +I  ++  +  + TA    + CT      +
Sbjct: 12  LASLLLLLLATRAHGIRLDRQLHEAINNKQEIMRDSKAEQSLNTARLMNKHCTSDGHCNS 71

Query: 545 SRLREPTLWSTIQDSASELSERAKLFR 625
            +++ P + +    +A +  +   L R
Sbjct: 72  GKVQRPVVQAEAGAAAKQQQQNQSLER 98


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,898,363
Number of Sequences: 37544
Number of extensions: 304366
Number of successful extensions: 1007
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)