Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0050
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1511 - 30669292-30669401,30669894-30669930,30670012-306701...    29   3.8  
01_05_0799 + 25334460-25334994,25335060-25335236,25335325-253354...    28   8.7  

>06_03_1511 -
           30669292-30669401,30669894-30669930,30670012-30670107,
           30670186-30670281,30670679-30670828,30670956-30671100,
           30671178-30671251,30671325-30671445,30671697-30671821,
           30671898-30672047,30672249-30672324,30672496-30672557,
           30672597-30672839,30673354-30673683,30673776-30673932,
           30674008-30674139,30674219-30674277,30674734-30674798,
           30674878-30675094,30675413-30675499,30675655-30675750,
           30675938-30676003,30676096-30676287,30676380-30676532,
           30676812-30677052,30677322-30677515,30678212-30678348,
           30678474-30678480,30678708-30678830,30679370-30679427,
           30680018-30680090,30680493-30681765
          Length = 1714

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 386 DISSKISVQRLPRPSNRNALLLHGRVVVPTRADSHKVL 499
           D+  ++S   LPR + +   LLH  V +PTR D  + +
Sbjct: 671 DLVCEVSKANLPRENVKQNSLLHSDVFLPTRKDKDQYM 708


>01_05_0799 +
           25334460-25334994,25335060-25335236,25335325-25335447,
           25335559-25335624,25335717-25336685,25336791-25336912,
           25337156-25337549,25337888-25338009,25338253-25338646,
           25338983-25339104,25339348-25339830,25340291-25340960,
           25341713-25342224,25342484-25342540
          Length = 1581

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 159 KLHPMKDLCTKKKYHVE*K*HGHLT 85
           KL  M DL TKKKY+ E + + H+T
Sbjct: 753 KLRDMLDLFTKKKYYGEVQAYAHVT 777



 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 159 KLHPMKDLCTKKKYHVE*K*HGHLT 85
           KL  M DL TKKKY+ E + + H+T
Sbjct: 925 KLRDMLDLFTKKKYYGEVQAYAHVT 949



 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -1

Query: 159  KLHPMKDLCTKKKYHVE*K*HGHLT 85
            KL  M DL TKKKY+ E + + H+T
Sbjct: 1097 KLRDMLDLFTKKKYYGEVQAYAHVT 1121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,169,702
Number of Sequences: 37544
Number of extensions: 383290
Number of successful extensions: 675
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)