SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0048
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0071 - 522920-523063,524125-524212,524289-524677                107   1e-23
03_06_0010 + 30990002-30990273,30990372-30990488,30990581-309906...   106   2e-23
03_06_0007 - 30975910-30975921,30976660-30976747,30976850-309769...    77   2e-14
11_04_0056 + 12942802-12942920,12943022-12943115                       58   5e-09
04_03_0232 - 13049649-13052807                                         31   0.84 
02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622     31   0.84 
09_04_0127 + 14883661-14884226,14884335-14885235                       29   3.4  
04_01_0084 - 912255-912368,912738-912822,914050-917105,920290-92...    29   4.5  
02_05_0220 - 26885502-26885561,26885940-26886739,26887055-268874...    28   7.8  

>07_01_0071 - 522920-523063,524125-524212,524289-524677
          Length = 206

 Score =  107 bits (256), Expect = 1e-23
 Identities = 45/83 (54%), Positives = 61/83 (73%)
 Frame = +3

Query: 6   TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLR 185
           +G   + +V+D R H+LGRLA+++AK LL G +VVVVRCE++ ISG   R K+K + FLR
Sbjct: 5   SGLCTRRVVVDARHHMLGRLASLVAKELLNGQRVVVVRCEEMCISGGLVRQKMKYLRFLR 64

Query: 186 KRCNVNPARGPFHFRAPSKILWK 254
           KR N  P+ GP HFRAPS+I W+
Sbjct: 65  KRMNTKPSHGPIHFRAPSRIFWR 87



 Score = 95.1 bits (226), Expect = 5e-20
 Identities = 41/81 (50%), Positives = 52/81 (64%)
 Frame = +2

Query: 257 VRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSH 436
           VRGMIPHKT RG+ AL  L+ +DG PPP+D               L+PG  YC +G+LS 
Sbjct: 89  VRGMIPHKTPRGEAALANLKAFDGVPPPYDRTKRMVVPDALKVLRLQPGHKYCLLGQLSK 148

Query: 437 EIGWKYRDVVRKLEDKRKGKA 499
           E+GW Y D +R+LE+KRK KA
Sbjct: 149 EVGWNYHDTIRELEEKRKEKA 169


>03_06_0010 +
           30990002-30990273,30990372-30990488,30990581-30990668,
           30991505-30991648
          Length = 206

 Score =  106 bits (254), Expect = 2e-23
 Identities = 46/83 (55%), Positives = 61/83 (73%)
 Frame = +3

Query: 6   TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMSFLR 185
           +G     +V+D R H+LGRLA++IAK LL G +VVVVRCE+I +SG   R K+K + FLR
Sbjct: 5   SGVCAPRVVVDARHHMLGRLASIIAKELLNGQRVVVVRCEEICMSGGLVRQKMKYLRFLR 64

Query: 186 KRCNVNPARGPFHFRAPSKILWK 254
           KR N  P+ GP HFR+P+KILW+
Sbjct: 65  KRMNTKPSHGPIHFRSPAKILWR 87



 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 42/81 (51%), Positives = 54/81 (66%)
 Frame = +2

Query: 257 VRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSH 436
           VRGMIPHKT+RG+ AL RL+ Y+G PPP+D               L+PG  YC +G+LS 
Sbjct: 89  VRGMIPHKTKRGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSK 148

Query: 437 EIGWKYRDVVRKLEDKRKGKA 499
           E+GW Y D +R+LE+KRK KA
Sbjct: 149 EVGWNYYDTIRELEEKRKEKA 169


>03_06_0007 -
           30975910-30975921,30976660-30976747,30976850-30976966,
           30977081-30977154
          Length = 96

 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 33/71 (46%), Positives = 43/71 (60%)
 Frame = +2

Query: 257 VRGMIPHKTERGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSH 436
           VRGMIPHKT+RG+ AL RL+ Y+   PP+D               L+PG  YC +G+LS 
Sbjct: 23  VRGMIPHKTKRGEAALARLKAYEVVTPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSK 82

Query: 437 EIGWKYRDVVR 469
           E+GW Y D +R
Sbjct: 83  EVGWNYYDTIR 93



 Score = 36.7 bits (81), Expect = 0.017
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +3

Query: 195 NVNPARGPFHFRAPSKILWK 254
           N  P+ GP HFR+P+KILW+
Sbjct: 2   NTKPSHGPIHFRSPAKILWR 21


>11_04_0056 + 12942802-12942920,12943022-12943115
          Length = 70

 Score = 58.4 bits (135), Expect = 5e-09
 Identities = 24/56 (42%), Positives = 32/56 (57%)
 Frame = +2

Query: 287 RGKNALRRLRTYDGCPPPFDNXXXXXXXXXXXXFCLKPGRNYCHVGRLSHEIGWKY 454
           RG+ AL RL+ Y+G PPP+D               L+PG  YC +G+LS E+GW Y
Sbjct: 9   RGEAALARLKAYEGVPPPYDRTKRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWNY 64


>04_03_0232 - 13049649-13052807
          Length = 1052

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 497 PCPSSCLQAYEQHHGISIQFHGTVCLH 417
           PCPS+CL+ Y  H  IS+Q      LH
Sbjct: 763 PCPSNCLKPYSAHCYISVQDEMQTNLH 789


>02_04_0447 + 22998353-22999033,22999665-22999831,22999965-23000622
          Length = 501

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 416 HVGRLSHEIGWKYRDVVRKLEDKRKGKAVKRLPM-KRNLRGSPRMLVR 556
           H G    E G    +VVR L D  +GKAV+RL +  R LR  P  L R
Sbjct: 165 HGGGGEEEAGVVDDEVVRVLRDAEEGKAVERLLLADRQLRHLPEQLGR 212


>09_04_0127 + 14883661-14884226,14884335-14885235
          Length = 488

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/51 (31%), Positives = 30/51 (58%)
 Frame = +2

Query: 494 KAVKRLPMKRNLRGSPRMLVRRCRKRQHHSLPSSNPMDTIRTKKFYKNKPF 646
           +AV++L ++++L+ + R +VRR R  Q  + PSS  +  +      K+ PF
Sbjct: 439 RAVRQL-VQQSLQSNMRRIVRRARLPQDLAPPSSENLKALTASSTSKSLPF 488


>04_01_0084 - 912255-912368,912738-912822,914050-917105,920290-920508
          Length = 1157

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 549  W*EGVESDNTIHYHHPILWIPLGLRNFTKINPFG 650
            W +G++ D   + HHP L++P   R + K  P G
Sbjct: 1055 WWDGLQWDGLENGHHPSLYVPTHSRYYKKKLPRG 1088


>02_05_0220 - 26885502-26885561,26885940-26886739,26887055-26887421,
            26887942-26888055,26888132-26888228,26889115-26889235,
            26889306-26889390,26889494-26889643,26889871-26889987,
            26890123-26890221,26890439-26890495,26890581-26890664,
            26890759-26890828,26891015-26891169,26891557-26892095,
            26892327-26892393,26892436-26892984,26893574-26893768,
            26894485-26894569,26895822-26896441,26897154-26897486,
            26897552-26897616,26897868-26897955,26898250-26898331,
            26898720-26898796,26899152-26899256,26899496-26899630,
            26900199-26900888,26901474-26902261,26902990-26904673
          Length = 2825

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 66   AAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKLMS 176
            A   A   ++ + VVVV CE+  I+G    N +KL+S
Sbjct: 2515 AIAFAASAIQNSSVVVVTCEREVITGGHADNSVKLIS 2551


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,145,731
Number of Sequences: 37544
Number of extensions: 409310
Number of successful extensions: 1085
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1084
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -