Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0043
         (712 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0549 + 4082672-4082731,4083424-4083489,4083628-4083674,408...    32   0.39 
10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234           29   3.6  
11_06_0066 - 19741883-19742263,19743001-19743231,19743378-197435...    28   6.4  
03_05_0177 + 21557762-21559658,21563481-21563623,21564230-21564559     28   8.4  
03_03_0194 + 15319764-15319982,15320377-15320481,15320523-15320621     28   8.4  

>07_01_0549 +
           4082672-4082731,4083424-4083489,4083628-4083674,
           4083757-4083802,4083905-4083985,4084105-4084147,
           4084258-4084307,4084392-4084473,4084538-4084587,
           4084687-4084760,4084870-4084921,4085034-4085459,
           4085816-4086403
          Length = 554

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = +1

Query: 40  VCVVLAQALTDEQKENLKKHRADCLSETKADEQLVNKLKTGDFKTENEPLKKYALCMLIK 219
           VC+V+      +  E +KK  ++  SE +    LV  L   D+   N  L +   C  I 
Sbjct: 46  VCIVIGYCEGGDMSEAIKKANSNYFSEERLCMWLVQLLMALDYLHVNHILHRDVKCSNI- 104

Query: 220 SQLMTKDGKFK-KDVALAKVPNAED 291
              +TKD   +  D  LAKV  ++D
Sbjct: 105 --FLTKDQNIRLGDFGLAKVLTSDD 127


>10_01_0179 + 2034261-2035102,2035215-2035864,2036156-2037234
          Length = 856

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 3/39 (7%)
 Frame = +3

Query: 18  EDFYR--VRRLRCLGSGPHR*AEGELEETQSR-LSLRDE 125
           EDF+R  ++RL+ LG  P     GE+EE ++R +S+RD+
Sbjct: 103 EDFFRKSIQRLKTLG--PRHNIAGEIEELKARVISVRDQ 139


>11_06_0066 -
           19741883-19742263,19743001-19743231,19743378-19743530,
           19743667-19743726,19743806-19743874,19744639-19744719,
           19744818-19744920,19745392-19745534,19745621-19745683,
           19745803-19745870,19745974-19746055,19746147-19746260,
           19746362-19746570,19746647-19746818
          Length = 642

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/35 (42%), Positives = 22/35 (62%)
 Frame = -3

Query: 653 IKRDKQSYDEHRRKLNFGSRSNMLQQLNKIYRTDI 549
           +KR KQ  +E R+KL  GS S +L+Q+    R D+
Sbjct: 353 LKRQKQEIEELRKKLQ-GSHSEVLEQVILKQRNDM 386


>03_05_0177 + 21557762-21559658,21563481-21563623,21564230-21564559
          Length = 789

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = -3

Query: 638 QSYDEHRRKLNFGSRSNMLQQLNKIYRTD 552
           +SY++ +R L+FGS S+  +  NK +R++
Sbjct: 720 RSYEKKKRSLSFGSTSSSHEHKNKRHRSN 748


>03_03_0194 + 15319764-15319982,15320377-15320481,15320523-15320621
          Length = 140

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 515 CNILRYNHDIV*INTSELFNTNEVWNGWVGLCVYKK 408
           C I    HD+  I++S  F    +   W G+C++KK
Sbjct: 99  CYIYESKHDL--ISSSNKFGAKFLMGTWCGVCMWKK 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,625,319
Number of Sequences: 37544
Number of extensions: 352040
Number of successful extensions: 847
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 847
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)