Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0039
         (395 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0157 - 14547645-14547935                                         38   0.002
08_02_1435 + 27079184-27082006                                         27   5.5  
06_03_0002 - 15280292-15281550,15282714-15282840                       26   9.6  
01_06_1067 + 34258036-34258051,34264808-34265679                       26   9.6  

>12_02_0157 - 14547645-14547935
          Length = 96

 Score = 38.3 bits (85), Expect = 0.002
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = +1

Query: 82  EKLYRAIITLFSIVGFVWGYIVQQFSQSVYXXXXXXXXXXXXTVPPWPMYRRNPLNW 252
           E L + ++   ++  FV GY +  F   +             TVP WP + R+PL W
Sbjct: 10  EMLMQLLLVASAVAAFVVGYAMADFQLMLLVYAGGVVLTALVTVPNWPFFNRHPLKW 66


>08_02_1435 + 27079184-27082006
          Length = 940

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = +1

Query: 64  SDKQKQEKLYRAIITLFSIVGFVWGY 141
           SDK K  +++  +  +F+++GF +G+
Sbjct: 875 SDKHKHHEIFDTLTYMFTLLGFAFGF 900


>06_03_0002 - 15280292-15281550,15282714-15282840
          Length = 461

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 138 LYSSAILAVSVYSWCRISACCHSYCSSMANVPTQSSEL 251
           L+   +L     S  R +A C SYC S+ N+P + S +
Sbjct: 157 LWRVVLLCTECLSLVRSAAVC-SYCLSLDNLPPEDSSV 193


>01_06_1067 + 34258036-34258051,34264808-34265679
          Length = 295

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +3

Query: 60  YVGQAKAGEIIQGNNYI 110
           YVGQ KA +++ G+NY+
Sbjct: 4   YVGQLKAIQLLDGSNYV 20


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,109,801
Number of Sequences: 37544
Number of extensions: 165043
Number of successful extensions: 432
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 432
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)