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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0038
         (337 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0263 + 2136858-2137331                                          161   1e-40
12_01_0323 - 2459854-2460306                                          161   2e-40
11_01_0317 - 2365493-2365786,2365825-2365953                          123   3e-29
06_03_1161 - 28089177-28089359,28089473-28089700,28089776-280898...    29   1.2  
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132     28   2.2  
03_05_0697 + 26888791-26888861,26890468-26890579,26891561-268917...    27   2.9  
03_02_0446 - 8567436-8567567,8567649-8567768,8569837-8569914,857...    27   5.0  
02_05_0082 + 25679089-25679253,25680998-25681030,25681758-25682579     26   6.6  
11_06_0621 + 25587476-25587604,25588230-25588423,25588800-255888...    26   8.7  
03_05_0092 - 20714102-20717902                                         26   8.7  
02_05_0114 + 25958834-25961296                                         26   8.7  

>01_01_0263 + 2136858-2137331
          Length = 157

 Score =  161 bits (391), Expect = 1e-40
 Identities = 76/112 (67%), Positives = 96/112 (85%)
 Frame = +2

Query: 2   MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 181
           MK N +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+NV+S+PIRKDDEVQVVRG
Sbjct: 1   MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSSELRHKYNVRSIPIRKDDEVQVVRG 60

Query: 182 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMN 337
            YKG++ GKV+QVYR+++V+++ERI REK NG+T  VGIHPSK V+ KLK++
Sbjct: 61  SYKGRE-GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLD 111


>12_01_0323 - 2459854-2460306
          Length = 150

 Score =  161 bits (390), Expect = 2e-40
 Identities = 76/112 (67%), Positives = 96/112 (85%)
 Frame = +2

Query: 2   MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 181
           MK N +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+NV+S+PIRKDDEVQVVRG
Sbjct: 1   MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNVRSIPIRKDDEVQVVRG 60

Query: 182 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMN 337
            YKG++ GKV+QVYR+++V+++ERI REK NG+T  VGIHPSK V+ KLK++
Sbjct: 61  SYKGRE-GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLD 111


>11_01_0317 - 2365493-2365786,2365825-2365953
          Length = 140

 Score =  123 bits (297), Expect = 3e-29
 Identities = 65/112 (58%), Positives = 83/112 (74%)
 Frame = +2

Query: 2   MKFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPIRKDDEVQVVRG 181
           MK N +VTSSRRK RK HF+APS +RRVLMS+ LS ELR K+NV             VRG
Sbjct: 1   MKRNPRVTSSRRKCRKAHFTAPSSVRRVLMSAALSTELRHKYNV-------------VRG 47

Query: 182 HYKGQQVGKVMQVYRKKFVVYIERIQREKANGATAYVGIHPSKCVIVKLKMN 337
            YKG++ GKV+QVYR+++V+++ERI REK NG+T  VGIHPSK V+ KLK++
Sbjct: 48  SYKGRE-GKVVQVYRRRWVIHVERITREKVNGSTVNVGIHPSKVVVTKLKLD 98


>06_03_1161 -
           28089177-28089359,28089473-28089700,28089776-28089814,
           28090681-28090737,28090924-28091046
          Length = 209

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
 Frame = +2

Query: 5   KFNKQVTSSRRKNRKRHFSAPSHIRRVLMSSPLSKELRQKFNVKSMPI------RKDDEV 166
           +F  + ++S++    ++F     I+   +   L +  R+K    S+P+      R  D V
Sbjct: 42  EFRLRTSTSQQPTLCQNFVVKFMIKTCPIQMRLKRWERKKCKPNSLPVLHKMHVRIGDTV 101

Query: 167 QVVRGHYKGQQVGKVMQVYRKKFVVYIE 250
           QV+ G  KG +VG+V ++++    V ++
Sbjct: 102 QVIAGREKG-KVGEVTRLFKHNSTVIVK 128


>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
          Length = 5436

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
 Frame = +2

Query: 101  LSKELRQKFNVKS-MPIRKDDEVQVVRGHYKGQQVGKVMQ--VYRKKFVVYIERIQREKA 271
            L+ E+ ++ N KS +P  K+D   V  GH + + V +VMQ  +     +  IE +Q E++
Sbjct: 3846 LNDEVEEEKNDKSNIPKEKEDRFTV--GHTE-ESVHEVMQSVLVSDADLRSIETLQCEES 3902

Query: 272  NGATAYVGIHPSKCVIVK 325
            NG  +      S C+IV+
Sbjct: 3903 NGVKSTGDYLESGCIIVE 3920


>03_05_0697 + 26888791-26888861,26890468-26890579,26891561-26891757,
            26892215-26892266,26893530-26893795,26894007-26894229,
            26895154-26895327,26895408-26895485,26895566-26895817,
            26896138-26898204,26899477-26901322,26901474-26901574,
            26902179-26902535,26902681-26902799,26903558-26903559,
            26903630-26903662,26903709-26903841,26904285-26904537,
            26905688-26905912,26906401-26906466,26907373-26907471,
            26908528-26908545,26908546-26908893,26909878-26910354
          Length = 2522

 Score = 27.5 bits (58), Expect = 2.9
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +2

Query: 110  ELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIERI 256
            E   KF   + P  K D +Q+V  + + QQ    + V  K+F +YI  +
Sbjct: 1278 ETTWKFLATTNPYEKVDRLQIVSEYMEIQQTDGHVDVSAKEFKMYISSL 1326


>03_02_0446 -
           8567436-8567567,8567649-8567768,8569837-8569914,
           8570018-8570122,8570214-8570306,8570464-8570619
          Length = 227

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/49 (22%), Positives = 26/49 (53%)
 Frame = +2

Query: 107 KELRQKFNVKSMPIRKDDEVQVVRGHYKGQQVGKVMQVYRKKFVVYIER 253
           +EL+Q+ +  ++P   DDE +      + +++       R++FV++  R
Sbjct: 13  EELQQQHDEPAVPSADDDEAEAEENERRNRELKAGFHPLRRRFVLWYTR 61


>02_05_0082 + 25679089-25679253,25680998-25681030,25681758-25682579
          Length = 339

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 21/64 (32%), Positives = 33/64 (51%)
 Frame = -1

Query: 337 IHLQLDNHTL*RVNADICCCTIGLFSLNPLNVYNKLFTIHLHHFANLLAFVVSTYNLNFI 158
           + LQL   TL R  + +   T+  F  + LN  + LF + +H  ++ LAF   +YN    
Sbjct: 71  VSLQLWTATLLRDASWVKILTVAYFFGSFLN--HNLF-LAIHELSHNLAFTTPSYNRWLG 127

Query: 157 VFAN 146
           +FAN
Sbjct: 128 IFAN 131


>11_06_0621 +
           25587476-25587604,25588230-25588423,25588800-25588874,
           25589434-25591852
          Length = 938

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -3

Query: 233 TFYDTPASLCQPVGLCSVHVQPELHRLCE*AWILH*IFVLVP*TGERTSTLALY 72
           T YD  A++C   G+C + V P +       W  + +   +  TGE    LA Y
Sbjct: 284 TCYDVQATICLFSGICRLGVVPSV-------WTWNLLLKFIAETGEYEMVLAAY 330


>03_05_0092 - 20714102-20717902
          Length = 1266

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 265  FSLNPLNVYNKLFTIHLHHFANLLAFVVSTYN 170
            FS+ PL+  N LF +   H  N L   +S +N
Sbjct: 1114 FSIEPLDWLNCLFNVCSLHLENTLLLKLSMFN 1145


>02_05_0114 + 25958834-25961296
          Length = 820

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -3

Query: 233 TFYDTPASLCQPVGLCSVHVQPELHRLCE*AWILH*IFVLVP*TGERTSTLALY 72
           T YD  A++C   G+C + V P +       W  + +   +  TGE    LA Y
Sbjct: 166 TCYDVQATICLFSGICRLGVVPSV-------WTWNLLLKFIAETGEYEMVLAAY 212


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,941,816
Number of Sequences: 37544
Number of extensions: 178278
Number of successful extensions: 416
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 410
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 413
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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