Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0029
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0959 + 7542671-7542764,7542987-7543069,7543448-7543510           29   4.6  
08_01_0298 - 2406254-2406322,2406444-2406541,2408652-2408769,240...    28   6.1  

>01_01_0959 + 7542671-7542764,7542987-7543069,7543448-7543510
          Length = 79

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = +2

Query: 257 MEEYTTEDFNITGANFTKMETFFEYYRIPLNKILSAETGYISRKWPMFARQRRINHSPLT 436
           +E+YTT + N      +K++    + +  + K L+    +      MF+R+R I   PL+
Sbjct: 19  VEDYTTFNNNFDNMKSSKVKPLEAFMKSSIGKGLTIVKSFTVILHRMFSRRRAITRLPLS 78

Query: 437 L 439
           L
Sbjct: 79  L 79


>08_01_0298 -
           2406254-2406322,2406444-2406541,2408652-2408769,
           2408890-2408980,2409243-2409406,2410027-2410242,
           2410405-2410475,2410552-2410619,2412027-2412166
          Length = 344

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +3

Query: 495 DPTVASTTVGNVLRSFTNWIFLTSLYIQDLT*SVGIHINQKNIHIL 632
           DP      V  +L S  +W +  + +++ L   V +H ++KNI+ L
Sbjct: 33  DPDHLLVMVHGILGSNADWQYAANEFVKQLPDDVIVHCSEKNINTL 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,691,194
Number of Sequences: 37544
Number of extensions: 293738
Number of successful extensions: 705
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)