Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0028
         (559 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0311 + 27782110-27782326,27784121-27784268,27784394-277844...    29   3.3  
10_08_0874 - 21205506-21205685,21205825-21205998,21206114-212062...    28   4.4  
06_03_0400 - 20420257-20421837                                         28   4.4  
09_04_0704 + 19623046-19623386,19623583-19623792,19623872-196242...    27   7.7  

>02_05_0311 +
           27782110-27782326,27784121-27784268,27784394-27784478,
           27784555-27784650,27785666-27785731,27785900-27785998,
           27786145-27786258,27786468-27786578,27786672-27786734,
           27786816-27786908,27787960-27788073,27788440-27788505,
           27788782-27788994,27789086-27789116,27789459-27791587
          Length = 1214

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = +1

Query: 121 SLVQ*CLQAKI----RTKQGHVVGGCICCSTIHVGSWNSKYTKFG 243
           +L+Q C  AK+    R   GH+V    CC    VGS  + Y K G
Sbjct: 649 ALLQACGLAKVARLGRMVHGHLVTSGFCCDPFVVGSLVNTYAKVG 693


>10_08_0874 -
           21205506-21205685,21205825-21205998,21206114-21206249,
           21206622-21206794,21207612-21207839
          Length = 296

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 251 RYLPNFVYLEFQEPTWIVEQQMHPP 177
           RY  NF   +F+   W+ EQ  HPP
Sbjct: 228 RYAHNFSDCQFEYDDWLAEQCGHPP 252


>06_03_0400 - 20420257-20421837
          Length = 526

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 322 YLKGNENFKXNIQSIIPKLRQMTSVTCQILYI 227
           Y KG+ ++   + S I  LR ++S TC  LYI
Sbjct: 51  YAKGSPSYGSVLTSTIRNLRYLSSKTCNPLYI 82


>09_04_0704 +
           19623046-19623386,19623583-19623792,19623872-19624223,
           19624320-19624444,19624578-19624668,19624817-19625050
          Length = 450

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 93  NLLVNLIFQKSG--SIMPSGQNPHQTGSCCGWVHLL 194
           N+ VN++++     S+M   Q+P   G+   WVHLL
Sbjct: 182 NICVNILWKAFSPMSVMYPEQSPEFEGAVIAWVHLL 217


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,718,406
Number of Sequences: 37544
Number of extensions: 271329
Number of successful extensions: 499
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)