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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0026
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0241 - 23551471-23551591,23551755-23551833,23553140-235533...    32   0.50 
10_08_0448 + 18015609-18016052,18017147-18017248,18017332-180174...    29   3.5  
03_06_0103 + 31661707-31662798,31662806-31662833,31663632-316637...    28   6.1  
01_06_1286 + 36000741-36000796,36000885-36000939,36001036-360010...    28   6.1  
08_02_0660 - 19768165-19769394,19770500-19770752,19771307-197713...    28   8.1  
06_03_1329 - 29368815-29370064,29370186-29370318                       28   8.1  
05_05_0113 - 22485243-22485500,22485847-22486009,22486138-224862...    28   8.1  
02_03_0397 + 18574277-18574618,18574740-18574848,18574854-18575872     28   8.1  

>05_05_0241 -
           23551471-23551591,23551755-23551833,23553140-23553334,
           23553466-23553518,23553642-23553742,23553844-23553918,
           23554033-23554272,23554369-23554490,23554582-23554706,
           23554830-23554909,23555064-23555261
          Length = 462

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = -2

Query: 343 NIKGMFRMVPLPHYRAFHICYYGLILRSMCGSIYQPSKTGLISFADFHFI 194
           ++ GMFR   LP  + F +C+ G ++ S    + +PS   L++   F  +
Sbjct: 23  SVLGMFRYAVLPIAKVFVVCFMGFLMASKRVGVLKPSGRKLLNALVFSLL 72


>10_08_0448 +
           18015609-18016052,18017147-18017248,18017332-18017475,
           18017555-18017705,18017793-18017820,18018456-18018621,
           18018701-18018764,18019320-18019423,18019572-18019710,
           18020114-18020232,18020333-18020485,18020565-18020654,
           18020952-18021029,18021671-18021829,18021914-18022117,
           18022209-18022414,18022495-18022630,18022859-18022898,
           18023329-18023408,18023569-18024228
          Length = 1088

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/92 (21%), Positives = 43/92 (46%)
 Frame = +2

Query: 281 IADVKGTIVRQRYHTEHPFDVWSKSTAGIKGCFQQVLSLDLDKNRIHKTLAHDAMMQLHI 460
           + DV  T++    H E   D  +++ A + GC  + L+L L K   H  + ++ ++Q   
Sbjct: 427 LGDVSFTVIDNENHVEIVVDEAAETVARLLGCSIEDLNLALSKR--HMKVNNENIVQKLT 484

Query: 461 VDSKDGSSPFLMQMLWGKLISVVVYRRNQGIT 556
           +     +   L + L+  L   +V + N+ ++
Sbjct: 485 LSQAIDTRDALAKSLYASLFEWLVEQINKSLS 516


>03_06_0103 +
           31661707-31662798,31662806-31662833,31663632-31663721,
           31664725-31664789,31664864-31664980
          Length = 463

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
 Frame = +2

Query: 194 YKMEISETDEAGLRWL--INRTTHGPQNKSIIADVKGTIVRQRYHTEHPFDVWSKSTAGI 367
           YK   S ++ AG  W+  ++ T   P N+  + DV G +  +   +   F +W       
Sbjct: 263 YKSVGSGSNGAGEGWVETVSSTLAVPSNRKFVLDVTGRVTFETVRSFLEFALWKMHAGAK 322

Query: 368 KG 373
           KG
Sbjct: 323 KG 324


>01_06_1286 +
           36000741-36000796,36000885-36000939,36001036-36001086,
           36001962-36002053,36002301-36002378,36002778-36002931
          Length = 161

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 514 TDICCRLSKESGNYRRAVETNLRIGDQNP 600
           T++  R    +G Y R + T +R+GD  P
Sbjct: 78  TELAYRYKNRAGGYTRLLRTRIRVGDAAP 106


>08_02_0660 -
           19768165-19769394,19770500-19770752,19771307-19771372,
           19771524-19771588,19773265-19773343,19773920-19774293
          Length = 688

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +1

Query: 454 AHSGLQRWF*SVSDANALGETDICCRLSKESGNYR 558
           A  G   WF  + D  AL    +CC L   SG +R
Sbjct: 227 AAEGSGSWFLVMEDEAALERATVCCGLCHGSGTHR 261


>06_03_1329 - 29368815-29370064,29370186-29370318
          Length = 460

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +2

Query: 308 RQRYHTEHPFDVWSKSTAGIKGCFQQVLSLDLDKNRIHKTL 430
           R  ++ +HP+DV  K    IK  +    +++L+  ++  TL
Sbjct: 410 RDHFYIQHPYDVHKKGWDAIKTVYLDKQNVELNLTKLTNTL 450


>05_05_0113 -
           22485243-22485500,22485847-22486009,22486138-22486229,
           22486832-22486882,22487013-22487067,22487207-22487262
          Length = 224

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 514 TDICCRLSKESGNYRRAVETNLRIGDQNP 600
           T++  R    +G Y R + T +R+GD  P
Sbjct: 78  TELAYRYKDRAGGYTRLLRTRIRVGDAAP 106


>02_03_0397 + 18574277-18574618,18574740-18574848,18574854-18575872
          Length = 489

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = +2

Query: 320 HTEHPFDVWSKSTAGIKGCFQQVLSLDLDKNRIHKTLAHDAMMQLHIVDSKD 475
           H   P D+W +  A I G F+QV  +     R+  +  H  ++ L  +DS D
Sbjct: 50  HPALPEDLWDEHRAEISGFFEQVSHV-----RVAASFPHPNVVALFQIDSPD 96


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,843,511
Number of Sequences: 37544
Number of extensions: 387987
Number of successful extensions: 818
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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