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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0007
         (808 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298...    31   0.82 
02_02_0704 + 13095449-13095584,13095671-13095990,13096102-130964...    31   1.4  
07_03_1577 - 27869596-27869682,27869769-27869869,27869956-278699...    30   2.5  
07_03_0735 + 21075033-21075846,21077065-21077199,21077384-210775...    29   4.4  
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647...    29   4.4  
06_03_0355 + 19822110-19824491                                         29   5.8  
04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539     29   5.8  
06_03_0165 - 17399535-17400178,17400378-17400522                       28   7.6  
02_05_0599 - 30251708-30251815,30251864-30251984,30252068-302522...    28   7.6  
01_06_0241 - 27813076-27813622,27813695-27814125                       28   7.6  

>02_05_0702 - 31027908-31027958,31028062-31029311,31029665-31029842,
            31029955-31030017,31031597-31031704,31031772-31031836,
            31031928-31032015,31032104-31032157,31032234-31032380,
            31033358-31033429,31034077-31034226,31034317-31034430,
            31034762-31034875,31035925-31036077,31037437-31037529,
            31038202-31038318,31038984-31039086,31039192-31039376,
            31039448-31039522,31040451-31040534,31041547-31041588,
            31041668-31041847,31042109-31042162,31042239-31042280,
            31042869-31042967,31043040-31043174,31043325-31043427,
            31045061-31045134,31045227-31045270,31045393-31045471,
            31045592-31045705,31045842-31045946,31046027-31046161,
            31046447-31046546,31046870-31046883,31046936-31047004,
            31047079-31047182,31047299-31047347,31047931-31048023,
            31048102-31048210,31048619-31048755,31048851-31048928,
            31049015-31049104,31049402-31049467,31049546-31049638,
            31049711-31049839,31050024-31050122,31051366-31051512,
            31051605-31051910
          Length = 2050

 Score = 31.5 bits (68), Expect = 0.82
 Identities = 33/136 (24%), Positives = 57/136 (41%), Gaps = 20/136 (14%)
 Frame = +2

Query: 98   KDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQL 277
            K L  V   LKS+++        +++   K+   + E     K ++SL   +E   SSQ 
Sbjct: 1426 KKLNDVEASLKSEIDRHRKI---NINIKRKLDASAKEKEELTKEKQSLSKQLEDLKSSQK 1482

Query: 278  KHTETQEKNPLPDKD--------AIEAEKEKNK------------FLNGIENFDPTKLKH 397
              TE   +  + +KD         +E E++ NK            F   I+N +  + + 
Sbjct: 1483 TTTENSNEQAIKEKDFRIQTLEKVLEKERDDNKKEKAFRRRNEKVFTTAIQNMNQERKQV 1542

Query: 398  TETCEKNPLPTKDVIE 445
             E+ EK+    K+VIE
Sbjct: 1543 EESIEKHRQAVKEVIE 1558


>02_02_0704 +
           13095449-13095584,13095671-13095990,13096102-13096423,
           13096556-13096632,13096744-13097127
          Length = 412

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 26/90 (28%), Positives = 40/90 (44%)
 Frame = +2

Query: 74  SVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGI 253
           S S TP+ KDLP     L ++  G      +  +  ++  LP++   A   +      G 
Sbjct: 145 SPSPTPT-KDLPCKPVALNARKAG---GAFQPFEKEKRAELPASSTTAAASSTVVGDSGD 200

Query: 254 EKFDSSQLKHTETQEKNPLPDKDAIEAEKE 343
           +  D    KH ET + N   DKDA + +KE
Sbjct: 201 KPTDDDTEKHMETDKDN---DKDAKDKDKE 227


>07_03_1577 -
           27869596-27869682,27869769-27869869,27869956-27869995,
           27870879-27870953
          Length = 100

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +2

Query: 122 DLKSQLEGFNTSCLRDVDTNEKIVL 196
           DL+S+L+  NT CL + + N+K+++
Sbjct: 54  DLQSKLDAVNTECLAEKEKNKKLII 78


>07_03_0735 +
           21075033-21075846,21077065-21077199,21077384-21077517,
           21077604-21077814,21078033-21078270,21078346-21078496,
           21078593-21078931
          Length = 673

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +2

Query: 185 KIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTETQEKN 304
           K VLPS E++A ++   S   GIE+  +  +   + Q+KN
Sbjct: 361 KGVLPSGEEIAVKRLSMSSGQGIEELKNELVLVAKLQQKN 400


>01_01_0829 +
           6471032-6471870,6472490-6472685,6472772-6472956,
           6473206-6473539,6473629-6473833,6474927-6475033,
           6475117-6475269
          Length = 672

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +3

Query: 84  TLPP*KTSPRSPQT*RVSSKASTPAVSVTST 176
           TLPP + SP SP T   SSK  TP+ S  S+
Sbjct: 31  TLPPGRLSPVSPLTHSSSSKLPTPSSSSGSS 61


>06_03_0355 + 19822110-19824491
          Length = 793

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 18/72 (25%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +2

Query: 161 LRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDSSQLKHTET---QEKNPLPDKDAIE 331
           + +V    +++LP+ E+VATE    +    +E  D+  L  T     +E   +P+ D  E
Sbjct: 203 VEEVSVTHEVMLPNYEEVATEGDGDTAMAAVEN-DAGSLAETVVMTHEEFVAVPEDDEEE 261

Query: 332 AEKEKNKFLNGI 367
           A+ ++     G+
Sbjct: 262 ADGDEENDATGL 273


>04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539
          Length = 585

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 268 EPAEAHRDSGEEPASGQRRYRSGEGKEQ 351
           +P  A  D  E   +G RR+RSG G++Q
Sbjct: 206 DPRAADDDHAEAARNGVRRWRSGSGQQQ 233


>06_03_0165 - 17399535-17400178,17400378-17400522
          Length = 262

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 580 YNGNPAWAMATYSNPGFYSNPNDKSRLTPINSEWTP 687
           ++G   W   T    G YS   D +RLT I SE  P
Sbjct: 221 FSGEYRWCYPTPVREGIYSLATDANRLTTIFSEENP 256


>02_05_0599 -
           30251708-30251815,30251864-30251984,30252068-30252215,
           30252303-30252480,30252587-30252625,30252704-30252799,
           30252879-30253030,30253336-30253722,30253836-30253940,
           30254083-30254098
          Length = 449

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +1

Query: 295 GEEPASGQRRYRSGEGKEQIPERHRELR--SH*AEAHG-DVRKEPAP 426
           GEEPA      R+G G    P +HRE +  SH +  +G ++R+   P
Sbjct: 6   GEEPAHDFLSLRAGGGSSSPPFQHREEQHSSHSSRGYGMEIRRSLRP 52


>01_06_0241 - 27813076-27813622,27813695-27814125
          Length = 325

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +1

Query: 268 EPAEAHRDSGEEPASGQRRYRSGEGKEQIPERHRELRS-H*AEAHGDVRKEPAPHK 432
           EP   H  + ++     R +R+     ++ + HR  RS H A  + +V +    H+
Sbjct: 23  EPEANHESANQQSHHSNRSHRTASRNAEVEQPHRSNRSHHTASRNAEVEQSHCSHR 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,480,044
Number of Sequences: 37544
Number of extensions: 452182
Number of successful extensions: 1379
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1378
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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