Silkworm BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brP-0040
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1374 + 36740860-36741365,36742529-36743003,36743084-36743890     29   4.7  
02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203     28   6.2  
12_02_1279 + 27510605-27513301                                         28   8.2  

>01_06_1374 + 36740860-36741365,36742529-36743003,36743084-36743890
          Length = 595

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -3

Query: 368 NFVLSFDMWA-DAGLHVILSDAADKSVRDGESRV 270
           N  LSFD W  D  LH+++    D   R+  SRV
Sbjct: 12  NRALSFDDWVPDEALHLVMGHVEDPRDREAASRV 45


>02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203
          Length = 740

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = -3

Query: 365 FVLSFDMWADAGLHVILSD--AADKSVRDGESRVYPAVR--VHNGERDFINDAVN 213
           FVLS +  AD  L V   +    D SVR G+ R+Y A+    +NG    +N   N
Sbjct: 35  FVLSCNRSADGRLRVYNYEIEVVDVSVRRGQLRIYSAINPWCYNGSTSAMNGQSN 89


>12_02_1279 + 27510605-27513301
          Length = 898

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 235 SRSPLWTRTAGYTLLSPSRTDLSA 306
           SR+P+WT TAG T+L      L+A
Sbjct: 91  SRTPVWTATAGTTILQSIVLSLTA 114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,767,197
Number of Sequences: 37544
Number of extensions: 280511
Number of successful extensions: 755
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)